:: DESCRIPTION
metano is an open-source software toolbox for analyzing the capabilities of metabolic networks and for assisting in metabolic reconstruction.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Riemer SA, Rex R, Schomburg D.
A metabolite-centric view on flux distributions in genome-scale metabolic models.
BMC Syst Biol, 7:33 (2013).
:: DESCRIPTION
JMassBalance is a tool for mass-balanced randomization and analysis of metabolic networks. The tool allows efficient generation of large sets of randomized networks under the physical constraint of mass balance. In addition, various structural properties of the original and randomized networks can be calculated, facilitating the identification of the salient properties of metabolic networks with a biologically meaningful null model.
::DEVELOPER
Systems biology and Mathematical Modelling
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Georg Basler and Zoran Nikoloski (2011):
JMassBalance: mass-balanced randomization and analysis of metabolic networks.
Bioinformatics, 27(19):2761-2762. doi:10.1093/bioinformatics/btr448
:: DESCRIPTION
MONGOOSE (MetabOlic Network GrOwth Optimization Solved Exactly) is a package for structural analysis and refinement of constraint-based metabolic networks. Unlike other existing software, MONGOOSE uses exact rational arithmetic, which makes its results certifiably accurate.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Genome Biol. 2012 Jan 31;13(1):r6. doi: 10.1186/gb-2012-13-1-r6.
MetaMerge: scaling up genome-scale metabolic reconstructions with application to Mycobacterium tuberculosis.
Chindelevitch L, Stanley S, Hung D, Regev A, Berger B.
:: DESCRIPTION
SCAN is a MATLAB Toolbox which uses SBML files in COBRA structure format as input and builds different Metabolite-centric and Enzyme-centric Networks which are needed for pre and post-process of structural analysis softwares such as Cytoscape.
::DEVELOPER
Laboratory of Systems Biology & Bioinformatics (LBB)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
