Orange-Bioinformatics 3.28.0 – Orange Bioinformatics add-on for Orange data mining software package

Orange-Bioinformatics 3.28.0

:: DESCRIPTION

Orange Bioinformatics is an add-on for Orange data mining software package. It extends Orange by providing common functionality for basic tasks in bioinformatics. It also provides widgets for Orange Canvas, which enable users who are not programmers to manage microarray and genomic data flow and to customize their analysis by combining common data analysis tools to fit their needs.

::DEVELOPER

BioLab , University of Ljubljana

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 Orange-Bioinformatics

:: MORE INFORMATION

Citation:

Tomaž Curk, Janez Demšar, Qikai Xu, Gregor Leban, Uroš Petrovič, Ivan Bratko, Gad Shaulsky, Blaž Zupan.
Microarray data mining with visual programming.
Bioinformatics. 2005 Feb 1;21(3):396-8.

ScanToolBox 1.0 – Structural Cobra Add-oN for Metabolic Networks

ScanToolBox 1.0

:: DESCRIPTION

SCAN is a MATLAB Toolbox which uses SBML files in COBRA structure format as input and builds different Metabolite-centric and Enzyme-centric Networks which are needed for pre and post-process of structural analysis softwares such as Cytoscape.

::DEVELOPER

Laboratory of Systems Biology & Bioinformatics (LBB)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • MatLab
  • COBRA

:: DOWNLOAD

 ScanToolBox

:: MORE INFORMATION

PPFS 2 – Add on to kSNP for predicting Phenotypes from SNPs in Microbial Genome

PPFS 2

:: DESCRIPTION

The PPFS (Predict Phenotypes From SNPs) package is an add-on to kSNP , a program that can identify SNPs in a data set of hundreds of microbial genomes.

::DEVELOPER

Barry G. Hall

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX

:: DOWNLOAD

PPFS

:: MORE INFORMATION

Citation

PLoS One. 2014 Feb 28;9(2):e90490. doi: 10.1371/journal.pone.0090490. eCollection 2014.
SNP-associations and phenotype predictions from hundreds of microbial genomes without genome alignments.
Hall BG1.