Tag: MaSK

Censor 4.2.29 – Compares and Masks Protein or Nucleotide Sequences

Censor 4.2.29

:: DESCRIPTION

CENSOR is a software tool which screens query sequences against a reference collection of repeats and “censors” (masks) homologous portions with masking symbols, as well as generating a report classifying all found repeats.

:: DEVELOPER

Genetic Information Research Institute

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Censor

:: MORE INFORMATION

Citation:

Kohany O, Gentles AJ, Hankus L, Jurka J
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor.
BMC Bioinformatics, 2006 Oct 25;7:474

Mask / maskBAD 1.36.0 – Mask bad Probes in Affymetrix Expression data

Mask / maskBAD 1.36.0

:: DESCRIPTION

Mask is an R package and contains several functions to handle Affymetrix expression data. Its goal is to mask BAD probes that bias the expression results.

::DEVELOPER

Michael Dannemann, Michael Lachmann @Department of Genetics/Bioinformatics – Max Planck Institut

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Mask

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2012 Apr 16;13:56. doi: 10.1186/1471-2105-13-56.
‘maskBAD’–a package to detect and remove Affymetrix probes with binding affinity differences.
Dannemann M, Lachmann M, Lorenc A.

MaSK 1.3.0 – Molecular Modeling and Simulation Kit

MaSK 1.3.0

:: DESCRIPTION

MaSK (Molecular Modeling and Simulation Kit) is the software that is useful in the visualization of various molecular properties calculated by either GAMESS/Firefly or Gaussian? computational chemistry programs.

::DEVELOPER

Yevgeniy Podolyan

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/Linux

:: DOWNLOAD

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 MaSK

:: MORE INFORMATION

Citation

Y. Podolyan, J. Leszczynski.
MaSK: A Visualization Tool for Teaching and Research in Computational Chemistry.
Int. J. Quantum Chem. 2009, 109(1), 8-16.