Mask / maskBAD 1.36.0 – Mask bad Probes in Affymetrix Expression data

Mask / maskBAD 1.36.0

:: DESCRIPTION

Mask is an R package and contains several functions to handle Affymetrix expression data. Its goal is to mask BAD probes that bias the expression results.

::DEVELOPER

Michael Dannemann, Michael Lachmann @Department of Genetics/Bioinformatics – Max Planck Institut

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Mask

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2012 Apr 16;13:56. doi: 10.1186/1471-2105-13-56.
‘maskBAD’–a package to detect and remove Affymetrix probes with binding affinity differences.
Dannemann M, Lachmann M, Lorenc A.

southern_blot_design 20090825 – Automated Design of Genomic Southern Blot Probes

southern_blot_design 20090825

:: DESCRIPTION

southern_blot_design is a novel software pipeline for designing and optimizing Southern blot probes in silico for use against genomic DNA targets.

::DEVELOPER

Genes to Cognition (G2C)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Perl

:: DOWNLOAD

 southern_blot_design

:: MORE INFORMATION

Citation

BMC Genomics. 2010 Jan 29;11:74. doi: 10.1186/1471-2164-11-74.
Automated design of genomic Southern blot probes.
Croning MD1, Fricker DG, Komiyama NH, Grant SG.