Tag: Localisation

NucImport v2 – Nuclear Protein Import and Localisation Signals Predictor

NucImport v2

:: DESCRIPTION

NucImport is a protein sequence and interaction prediction service designed to determine the nuclear transport of proteins in mouse and yeast. NucImport uses Bayesian networks, recognizes NLSs, links interactions to localization signals and incorporates sequence similarity. NucImport accepts amino acid sequences from user, presented in the FASTA format, and determines the probability of nuclear import as well as the location of nuclear localization signal in the query protein.

::DEVELOPER

Institute for Molecular Bioscience, The University of Queensland

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Mac
  • Java

:: DOWNLOAD

 NucImport

:: MORE INFORMATION

Citation

Bioinformatics. 2011 May 1;27(9):1239-46. Epub 2011 Mar 3.
A probabilistic model of nuclear import of proteins.
Mehdi AM, Sehgal MS, Kobe B, Bailey TL, Bodén M.

Protein Prowler 1.2 – Subcellular Localisation Predictor

Protein Prowler 1.2

:: DESCRIPTION

The PProwler (Protein Prowler) Subcellular Localisation Predictor accepts amino acid sequences, presented in the FASTA format, and determines the localisation of the protein.

::DEVELOPER

Bioinformatics group,The University of Queensland

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

Bioinformatics. 2005 May 15;21(10):2279-86. Epub 2005 Mar 3.
Prediction of subcellular localization using sequence-biased recurrent networks.
Bodén M, Hawkins J.

iCluster 1.05 – SubCellular Localisation Image Visualiser

iCluster 1.05

:: DESCRIPTION

iCluster is a complete integrated methodology for testing for difference in fluorescent protein subcellular localisation imaging. iCluster combines components for automated statistics generation, spatial organisation and layout of image sets by similarity to enable patterns of difference in image sets to be seen and browsed, and statistical testing to give rigorous confirmation of differences between experiments.

DEVELOPER

Nicholas Hamilton. @ IMB (The University of Queensland’s Institute for Molecular Bioscience)

:: SCREENSHOTS

 

:: REQUIREMENTS

  • Windows / Mac / Linux
  • Java

:: DOWNLOAD

 iCluster

:: MORE INFORMATION

Citation

Statistical and visual differentiation of high throughput subcellular imaging,
N. Hamilton, J. Wang, M.C. Kerr and R.D. Teasdale, B
MC Bioinformatics 2009, 10:94