NRfamPred – Webserver for Nuclear Receptor Proteins and their Sub-family Prediction

NRfamPred

:: DESCRIPTION

NRfamPred is a SVM based two level predictor of nuclear receptor proteins and their sub-family.

::DEVELOPER

NRfamPred team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 NRfamPred

:: MORE INFORMATION

Citation

Sci Rep. 2014 Oct 29;4:6810. doi: 10.1038/srep06810.
NRfamPred: a proteome-scale two level method for prediction of nuclear receptor proteins and their sub-families.
Kumar R, Kumari B, Srivastava A, Kumar M

MINTbase V2 – Exploration of Mitochondrial and Nuclear tRNA Fragments

MINTbase V2

:: DESCRIPTION

MINTbase: a web-based framework that serves the dual-purpose of being a content repository for tRFs and a tool for the interactive exploration of these newly discovered molecules.

::DEVELOPER

the Computational Medicine Center at the Sidney Kimmel Medical College of Thomas Jefferson University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java

:: DOWNLOAD

MINTplates

:: MORE INFORMATION

Citation

Pliatsika, V, Loher, P, Telonis, AG, Rigoutsos, I.
MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments
Bioinformatics. 2016; In press.

NucImport – Nuclear Protein Import and Localisation Signals Predictor

NucImport

:: DESCRIPTION

NucImport is a protein sequence and interaction prediction service designed to determine the nuclear transport of proteins in mouse and yeast. NucImport uses Bayesian networks, recognizes NLSs, links interactions to localization signals and incorporates sequence similarity. NucImport accepts amino acid sequences from user, presented in the FASTA format, and determines the probability of nuclear import as well as the location of nuclear localization signal in the query protein.

::DEVELOPER

Institute for Molecular Bioscience, The University of Queensland

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Mac
  • Java

:: DOWNLOAD

 NucImport

:: MORE INFORMATION

Citation

Bioinformatics. 2011 May 1;27(9):1239-46. Epub 2011 Mar 3.
A probabilistic model of nuclear import of proteins.
Mehdi AM, Sehgal MS, Kobe B, Bailey TL, Bodén M.