Tag: iCluster

iCluster 2.1.0 / iClusterPlus 0.99.4 – Integrative Clustering of Multiple Genomic Data Types

iCluster 2.1.0 / iClusterPlus 0.99.4

:: DESCRIPTION

iCluster is a softwaer of integrative clustering of multiple genomic data types using a joint latent variable model.

iClusterPlus is a software for pattern discovery and cancer gene identification in integrated cancer genomic data

::DEVELOPER

Ronglai Shen

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ WIndows/MacOsX
  • R package

:: DOWNLOAD

 iCluster / iClusterPlus

:: MORE INFORMATION

Citation:

Bioinformatics. 2009 Nov 15;25(22):2906-12. doi: 10.1093/bioinformatics/btp543.
Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis.
Shen R, Olshen AB, Ladanyi M.

Proc Natl Acad Sci U S A. 2013 Mar 12;110(11):4245-50. doi: 10.1073/pnas.1208949110.
Pattern discovery and cancer gene identification in integrated cancer genomic data.
Mo Q, Wang S, Seshan VE, Olshen AB, Schultz N, Sander C, Powers RS, Ladanyi M, Shen R.

iCluster 1.05 – SubCellular Localisation Image Visualiser

iCluster 1.05

:: DESCRIPTION

iCluster is a complete integrated methodology for testing for difference in fluorescent protein subcellular localisation imaging. iCluster combines components for automated statistics generation, spatial organisation and layout of image sets by similarity to enable patterns of difference in image sets to be seen and browsed, and statistical testing to give rigorous confirmation of differences between experiments.

DEVELOPER

Nicholas Hamilton. @ IMB (The University of Queensland’s Institute for Molecular Bioscience)

:: SCREENSHOTS

 

:: REQUIREMENTS

  • Windows / Mac / Linux
  • Java

:: DOWNLOAD

 iCluster

:: MORE INFORMATION

Citation

Statistical and visual differentiation of high throughput subcellular imaging,
N. Hamilton, J. Wang, M.C. Kerr and R.D. Teasdale, B
MC Bioinformatics 2009, 10:94