Sweep 1.1 – Large-scale Analysis of Haplotype Structure

Sweep 1.1

:: DESCRIPTION

Sweep allows large-scale analysis of haplotype structure in genomes for the primary purpose of detecting evidence of natural selection.

::DEVELOPER

Sweep Team

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Mac OsX /Windows

:: DOWNLOAD

 Sweep

:: MORE INFORMATION

 

LARVA – Large-scale Analysis of Variants in noncoding Annotations

LARVA

:: DESCRIPTION

LARVA is a computational framework designed to facilitate the study of noncoding variants. It addresses issues that have made it difficult to derive an accurate model of the background mutation rates of noncoding elements in cancer genomes.

::DEVELOPER

Gerstein Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

LARVA

:: MORE INFORMATION

Citation:

LARVA: an integrative framework for large-scale analysis of recurrent variants in noncoding annotations.
Lochovsky L, Zhang J, Fu Y, Khurana E, Gerstein M.
Nucleic Acids Res. 2015 Sep 30;43(17):8123-34. doi: 10.1093/nar/gkv803.