IndelCoder 1.0.1.1 – Recodes the Gaps using the simple Indel Coding algorithm

IndelCoder 1.0.1.1

:: DESCRIPTION

IndelCoder takes a NEXUS file containing aligned DNA sequences and recodes the gaps using the simple indel coding algorithm.

::DEVELOPER

Michael S. Rosenberg’s Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux

:: DOWNLOAD

  IndelCoder

:: MORE INFORMATION

Citation

Ogden, T.H., and M.S. Rosenberg (2007)
How should gaps be treated in parsimony? A comparison of approaches using simulation.
Molecular Phylogenetics and Evolution 42(3):817–826.

SeqState 1.4.1 – Primer Design, Sequence Statistics & Indel Coding

SeqState 1.4.1

:: DESCRIPTION

SeqState is a software for primer design and sequence statistics for phylogenetic DNA data sets.

::DEVELOPER

BioInfWeb projects

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / Mac OsX
  • Java

:: DOWNLOAD

SeqState

:: MORE INFORMATION

Citation

Müller K:
SeqState primer design and sequence statistics for phylogenetic DNA data sets
Applied Bioinformatics 2005, 4:65-69

Müller K
Incorporating information from length-mutational events into phylogenetic analysis.
Molecular Phylogenetics and Evolution 2006, 38:667-676