:: DESCRIPTION
DRBTool supports a new technique for determining HLA genotypes at the DRB1 locus through non-electrophoretic scoring of group-specific PCR.
::DEVELOPER
Institute for Clinical Molecular Biology
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Hampe J, Valentonyte R, Manaster C, Teuber M, Jenisch S, Entz P, Nagy M, Schreiber S (2004).
Nonelectrophoretic method for high-throughput HLA-DRB1 group genotyping.
BioTechniques 36: 148-151
:: DESCRIPTION
HIBAG is a state of the art software package for imputing HLA types using SNP data, and it uses the R statistical programming language. HIBAG is highly accurate, computationally tractable, and can be used by researchers with published parameter estimates (provided for subjects of European, Asian, Hispanic and African ancestries) instead of requiring access to large training sample datasets. It combines the concepts of attribute bagging, an ensemble classifier method, with haplotype inference for SNPs and HLA types. Attribute bagging is a technique which improves the accuracy and stability of classifier ensembles deduced using bootstrap aggregating and random subsets of variables.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
X. Zheng, J. Shen, C. Cox, J. Wakefield, M. Ehm, M. Nelson, B. Weir.
HIBAG – HLA Genotype Imputation with Attribute Bagging
Pharmacogenomics J. 2013 May 28. doi: 10.1038/tpj.2013.18.
:: DESCRIPTION
HLAminer is a software for HLA class I predictions from next-generation shotgun (NGS) sequence read data that supports direct read alignment (HPRA) and targeted assembly of sequence reads (HPTASR).
::DEVELOPER
Canada’s Michael Smith Genome Sciences Centre
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genome Med. 2012 Dec 10;4(12):95.
Derivation of HLA types from shotgun sequence datasets.
Warren RL, Choe G, Freeman DJ, Castellarin M, Munro S, Moore R, Holt RA.
:: DESCRIPTION
HLA-IMPUTER implements the HIBAG algorithm for HLA allele imputation with different population specific reference panels, including a new Han Chinese reference panel derived from 10,689 samples.
::DEVELOPER
WANLING YANG’S GROUP IN BIOINFORMATICS @ University of Hong Kong
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Bioinformatics. 2019 Apr 1;35(7):1244-1246. doi: 10.1093/bioinformatics/bty730.
HLA-IMPUTER: an easy to use web application for HLA imputation and association analysis using population-specific reference panels.
Shen JJ, Yang C, Wang YF, Wang TY, Guo M, Lau YL, Zhang X, Sheng Y, Yang W.
:: DESCRIPTION
DHLAS (database HLA system) is a user-friendly, web-based information system for the analysis of human leukocyte antigens (HLA) data from population studies.
::DEVELOPER
Department of Biomathematics. School of Medicine. University of Thessaly.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Thriskos P, Zintzaras E, Germenis A.
DHLAS: A web-based information system for statistical genetic analysis of HLA population data.
Comput Methods Programs Biomed. 2007 Mar;85(3):267-72. Epub 2006 Dec 28.