:: DESCRIPTION
SAGPAR is a fast and robust algorithm that generates any metabolic pathway using some given structural representations of metabolites.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Interdiscip Sci. 2012 Jun;4(2):116-27. doi: 10.1007/s12539-012-0119-8. Epub 2012 Jul 29.
SAGPAR: structural grammar-based automated pathway reconstruction.
Tagore S1, De RK.
:: DESCRIPTION
The ggbio package extends and specializes the grammar of graphics for biological data. The graphics are designed to answer common scientific questions, in particular those often asked of high throughput genomics data.
:: DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genome Biol. 2012 Aug 31;13(8):R77.
ggbio: an R package for extending the grammar of graphics for genomic data.
Yin T, Cook D, Lawrence M.
:: DESCRIPTION
CONUS is an implementation of simple stochastic context-free grammars for RNA secondary structure analysis.CONUS developed for exploring the consequences of different single sequence SCFG designs in predicting RNA secondary structure.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Dowell, RD and Eddy, SR.
Evaluation of Several Lightweight Stochastic Context Free Grammars for RNA Secondary Structure Prediction.
BMC Bioinformatics 5:71 (2004).
:: DESCRIPTION
WordSpy is a novel, steganalysis-based approach for genome-wide motif finding. The software views regulatory regions as a stegoscript with cis-elements embedded in ‘background’ sequences. WordSpy can discover a complete set of cis-elements and facilitate the systematic study of regulatory networks.
::DEVELOPER
Computational Intelligence Center(CIC)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Guandong Wang and Weixiong Zhang
A steganalysis-based approach for genome-wide identification of regulatory DNA sequence elements
Genome Biology 2006, 7:R49
