CONUS 1.0 – Exploration of Lightweight Stochastic Context Free Grammars

CONUS 1.0

:: DESCRIPTION

CONUS is an implementation of simple stochastic context-free grammars for RNA secondary structure analysis.CONUS developed for exploring the consequences of different single sequence SCFG designs in predicting RNA secondary structure.

::DEVELOPER

Eddy lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

CONUS

:: MORE INFORMATION

Citation

Dowell, RD and Eddy, SR.
Evaluation of Several Lightweight Stochastic Context Free Grammars for RNA Secondary Structure Prediction.
BMC Bioinformatics 5:71 (2004).

SCFG Structural Entropy 20120907 – Calculate RNA Structural Entropies through Stochastic Context Free Grammars

SCFG Structural Entropy 20120907

:: DESCRIPTION

SCFG Structural Entropy is a software to calculate RNA structural entropies through stochastic context free grammars.

::DEVELOPER

Russell Malmberg Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 SCFG Structural Entropy

:: MORE INFORMATION

Citation

J Theor Biol. 2013 Feb 7;318:140-63. doi: 10.1016/j.jtbi.2012.10.023. Epub 2012 Nov 14.
Information-theoretic uncertainty of SCFG-modeled folding space of the non-coding RNA.
Manzourolajdad A1, Wang Y, Shaw TI, Malmberg RL.