:: DESCRIPTION
Moara is a software for gene mentions and normalization in biological texts.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Moara: a Java library for extracting and normalizing gene and protein mentions.
Neves ML, Carazo JM, Pascual-Montano A.
BMC Bioinformatics. 2010 Mar 26;11:157.
:: DESCRIPTION
GenBank2Treedyn etract annotations from GenBank files for:
More convenient alignments and phylogeny (replace def line of fasta file by GI number)
Extremely powerfull annotations of phylogenetic trees with TreeDyn.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Glob-mapper is required to plot Event-mapper and Peak-mapper data and to extract hot spots (gene clusters) from the Event maps. Glob-mapper will search for the input data in a directory with pre-computed *.dat and *.sgn files generated by Event- or Peak-mapper, Glob-mapper also requires an identification file, containing genes ID and other information (a sample file is provided). This information will be displayed for the extracted genes. The ID file must contain at least three columns of data: 1 – unique profile identifier, 2 – gene identifier or CG number, this information will be extracted, 3 (must be the last column) – user-defined score value, this value is used to display a subset of the entire data on Event maps. Using this value user can, for instance, display all genes of a given pathway, which may serve as a marker in the analysis of the global gene expression.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Goltsev Y, Papatsenko D.
“Time warping of evolutionary distant temporal gene expression data based on noise suppression”
BMC Bioinformatics. 2009 Oct 26;10:353.
:: DESCRIPTION
EPIG (Extracting Patterns and Identifying co-expressed Genes) is a method for Extracting microarray gene expression Patterns and Identifying co-expressed Genes. Through evaluation of the correlations among profiles, the magnitude of variation in gene expression profiles, and profile signal-to-noise ratios, EPIG extracts a set of patterns representing co-expressed genes without a pre-defined seeding of the patterns.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
BMC Bioinformatics. 2007 Nov 2;8:427.
Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes.
Chou JW, Zhou T, Kaufmann WK, Paules RS, Bushel PR.
:: DESCRIPTION
RegionalHapMapExtractor is a software to extract a region from hapMapII for MaCH imputation
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: MORE INFORMATION
:: DESCRIPTION
ExtractImputed is a software to extract information for a subset of sites from imputed dataset
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: MORE INFORMATION
:: DESCRIPTION
FCSExtract utility is to extract Flow Cytometry Standard (FCS) data from a binary FCS file and convert it to an ASCII text format, which can be read by a variety of software analysis packages.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
g3data is used for extracting data from graphs. In publications graphs often are included, but the actual data is missing. g3data makes the extracting process much easier.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
g3data is distributed under the GNU General Public License (GPL), as described in the ‘COPYING’ file.
