Tag: Gene Expression Pattern

NACEP 20140602 – Network-based Comparison of Temporal Gene Expression Patterns

NACEP 20140602

:: DESCRIPTION

NACEP (Network-based comparison of temporal gene expression patterns) is a model-based, open source tool for time-course data analysis. It explicitly uses co-expression network information in comparison of temporal gene expression data.

::DEVELOPER

Zhong Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

  NACEP

:: MORE INFORMATION

Citation

Bioinformatics. 2010 Dec 1;26(23):2944-51. Epub 2010 Sep 30.
Network-based comparison of temporal gene expression patterns.
Huang W, Cao X, Zhong S.

EPIG – Extract Microarray Gene Expression Patterns and Identifying co-expressed Genes

EPIG

:: DESCRIPTION

EPIG (Extracting Patterns and Identifying co-expressed Genes) is a method for Extracting microarray gene expression Patterns and Identifying co-expressed Genes. Through evaluation of the correlations among profiles, the magnitude of variation in gene expression profiles, and profile signal-to-noise ratios, EPIG extracts a set of patterns representing co-expressed genes without a pre-defined seeding of the patterns.

::DEVELOPER

Clarice R. Weinberg, Ph.D.

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows /MacOsX
  • Java 

:: DOWNLOAD

 EPIG 

:: MORE INFORMATION

Citation:

BMC Bioinformatics. 2007 Nov 2;8:427.
Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes.
Chou JW, Zhou T, Kaufmann WK, Paules RS, Bushel PR.