:: DESCRIPTION
ApoCanD is a database comprises of crucial information of apoptosis proteins in the context of cancer.This database will facilitate the research community working in the field of apoptosis and cancer.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
ApoCanD: Database of human apoptotic proteins in the context of cancer.
Kumar R, Raghava GP.
Sci Rep. 2016 Feb 10;6:20797. doi: 10.1038/srep20797.
:: DESCRIPTION
PhenoFam performs gene set enrichment analysis by employing structural and functional information on families of protein domains as annotation terms. The tool is designed to analyse complete sets of results from quantitative high-throughput studies (gene expression microarrays, functional RNAi screens, etc.) without prior pre-filtering or hits-selection steps.
::DEVELOPER
Frank Buchholz , Max Planck Institute of Molecular Cell Biology and Genetics.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2010 May 17;11:254. doi: 10.1186/1471-2105-11-254.
PhenoFam – gene set enrichment analysis through protein structural information.
Paszkowski-Rogacz M, Slabicki M, Pisabarro MT, Buchholz F.
:: DESCRIPTION
CTX-PSI-BLAST (Contextual PSI-BLAST ) is an extension of NCBI Toolkit that incorporates contextual alignment model into the iterative version of BLAST algorithm known as PSI-BLAST. It allows to investigate the effect of context-dependency in the protein alignment in genomic scale. The software makes use of non-symmetric contextual substitution tables and calculates the statistical significance of a given alignment according to the contextual statistical model.
CTX-BLAST is a software tool that incorporates contextual alignment model into the popular protein BLAST program. Our efficient alignment tool allows us to investigate the effect of context-dependency in the protein alignment in genomic scale. The software makes use of non-symmetric contextual substitution tables and calculates the statistical significance of a given alignment according to the contextual statistical model.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics. 2007 Jul 1;23(13):1686-8. Epub 2007 Apr 25.
CTX-BLAST: context sensitive version of protein BLAST.
Gambin A, Wojtalewicz P.