ApoCanD is a database comprises of crucial information of apoptosis proteins in the context of cancer.This database will facilitate the research community working in the field of apoptosis and cancer.
PhenoFam performs gene set enrichment analysis by employing structural and functional information on families of protein domains as annotation terms. The tool is designed to analyse complete sets of results from quantitative high-throughput studies (gene expression microarrays, functional RNAi screens, etc.) without prior pre-filtering or hits-selection steps.
CTX-PSI-BLAST (Contextual PSI-BLAST ) is an extension of NCBI Toolkit that incorporates contextual alignment model into the iterative version of BLAST algorithm known as PSI-BLAST. It allows to investigate the effect of context-dependency in the protein alignment in genomic scale. The software makes use of non-symmetric contextual substitution tables and calculates the statistical significance of a given alignment according to the contextual statistical model.
CTX-BLAST is a software tool that incorporates contextual alignment model into the popular protein BLAST program. Our efficient alignment tool allows us to investigate the effect of context-dependency in the protein alignment in genomic scale. The software makes use of non-symmetric contextual substitution tables and calculates the statistical significance of a given alignment according to the contextual statistical model.