singlecellVR is a browser-contained, free, and open-access tool that allows users to interactively explore published studies or new data through an innovative VR interface. singlecellVR supports clustering, trajectory inference and abstract graph analysis for transcriptomic as well as epigenomic single cell data.
CFinder offers a fast and efficient method for clustering data represented by large graphs, such as genetic or social networks and microarray data. CFinder is a free software for finding overlapping dense groups of nodes in networks, based on the Clique Percolation Method, CPM, of Palla et. al. Nature (2005).
BIC-seq can accurately and efficiently identify CNVs via minimizing the Bayesian information criterion.Using BIC-seq, we identified hundreds of CNVs as small as 40 bp in the cancer genome sequenced at 10× coverage, whereas we could only detect large CNVs (> 15 kb) in the array comparative genomic hybridization profiles for the same genome.
chipchipnorm (ChIP-chip normalization) is a R package that can be incorporated into the normalization workflow for chip-chip data, chromatin immunoprecipitation (ChIP) with microarray technology (chip).
LAILAPS combines a keyword driven search engine for an integrative access to life science databases, machine learning for a content driven relevance ranking, recommender systems for suggestion of related data records and query refinements with a user feedback tracking system for an self learning relevance training
Cromwell is an implementation of our algorithms for low-level processing of mass spectrometry proteomics data. Cromwell represents our third attempt (at least) to find a method to process spectra that both works quickly and achieves reasonably good results.
GenEx is a popular software for qPCR data processing and analysis. Built in a modular fashion GenEx provides a multitude of functionalities for the qPCR community, ranging from basic data editing and management to advanced cutting-edge data analysis.