CTX-PSI-BLAST 1.0 / CTX-BLAST 1.0
:: DESCRIPTION
CTX-PSI-BLAST (Contextual PSI-BLAST ) is an extension of NCBI Toolkit that incorporates contextual alignment model into the iterative version of BLAST algorithm known as PSI-BLAST. It allows to investigate the effect of context-dependency in the protein alignment in genomic scale. The software makes use of non-symmetric contextual substitution tables and calculates the statistical significance of a given alignment according to the contextual statistical model.
CTX-BLAST is a software tool that incorporates contextual alignment model into the popular protein BLAST program. Our efficient alignment tool allows us to investigate the effect of context-dependency in the protein alignment in genomic scale. The software makes use of non-symmetric contextual substitution tables and calculates the statistical significance of a given alignment according to the contextual statistical model.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Blast
- C++ Complier
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics. 2007 Jul 1;23(13):1686-8. Epub 2007 Apr 25.
CTX-BLAST: context sensitive version of protein BLAST.
Gambin A, Wojtalewicz P.