RadCon 1.1.6 – Phylogenetic Tree Consensus & Comparison Program

RadCon 1.1.6

:: DESCRIPTION

RadCon is a phylogenetic tree consensus and comparison program for Macs (OS 7.5 – 9).Implemented methods include the strict reduced consensus method, leaf stability, cladistic information content, double decay analysis and matrix representation with parsimony.

::DEVELOPER

:: SCREENSHOTS

:: REQUIREMENTS

Mac(OS 7.5 – 9)

:: DOWNLOAD

:: MORE INFORMATION

Citation

Joseph L. Thorley and Roderic D. M. Page
RadCon: phylogenetic tree comparison and consensus
Bioinformatics (2000) 16 (5): 486-487.

Consensus 20040414 – Web Interface for Finding DNA and Protein Patterns

Consensus 20040414

:: DESCRIPTION

Consensus Server determines consensus patterns in unaligned sequences. The algorithm is based on a matrix representation of a consensus pattern.

::DEVELOPER

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Apache 1.3.2 (or higher version)
Gnu C Compiler
GD-1.32 or Higher version
Pbmplus
Ghostscript

:: DOWNLOAD

:: MORE INFORMATION

Citation

Bioinformatics. 1999 Jul-Aug;15(7-8):563-77.
Identifying DNA and protein patterns with statistically significant alignments of multiple sequences.
Hertz GZ, Stormo GD.

dnaMATE 1.0 – Consensus Melting Temperature Prediction server for short DNA sequences

dnaMATE 1.0

:: DESCRIPTION

dnaMATE is a software which calculates a consensus melting temperature (Tm) for any given short DNA sequence (16-30 nts).

dnaMATE online version

::DEVELOPER

Francisco Melo Ledermann

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/Windows/MacOsX

:: DOWNLOAD

:: MORE INFORMATION

Citation

Panjkovich, A., Norambuena, T. and Melo, F. (2005)
dnaMATE: a consensus melting temperature prediction server for short DNA sequences.
Nucleic Acids Research, 33, 570-572.

ILPMap 20110128 – Construct Consensus Genetic Maps under Comparative Analysis

ILPMap 20110128

:: DESCRIPTION

ILPMap is a software of constructing consensus genetic maps in comparative analysis.

::DEVELOPER

Chen Xin , Yang Jian-Yi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows
IBM ILOG CPLEX

:: DOWNLOAD

:: MORE INFORMATION

Citation

X. Chen and J. Yang.
Constructing Consensus Genetic Maps in Comparative Analysis.
J Comput Biol. 2010 Nov;17(11):1561-73. Epub 2010 Oct 20.

RNA – RNA Consensus Secondary Structure Prediction Software

RNA

:: DESCRIPTION

RNA is a program to predict the consensus secondary structure of a set of unaligned RNA sequences

::DEVELOPER

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

:: MORE INFORMATION

Citation

D. Bouthinon and H. Soldano,
A new method to predict the consensus secondary structure of a set of unaligned RNA sequences
BioInformatics, Vol 15 n°10, 1999, pages 785-798).