ViroBLAST – BLAST web interface

ViroBLAST

:: DESCRIPTION

ViroBLAST is a BLAST web interface for nucleotide and amino acid sequence similarity searches.

ViroBLAST Online Version

::DEVELOPER

 Dr. Mullins Labat University of Washington

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX/Windows
  • BLAST

:: DOWNLOAD

 ViroBLAST

:: MORE INFORMATION

Citation:

Deng W, Nickle DC, Learn GH, Maust B, and Mullins JI. 2007.
ViroBLAST: A stand-alone BLAST web server for flexible queries of multiple databases and user’s datasets.
Bioinformatics 23(17):2334-2336.

 

Coloc-stats 1.0b1 – Web Interface to perform co-localization analysis of Genomic Features

Coloc-stats 1.0b1

:: DESCRIPTION

Coloc-stats is a collaborative project between the authors of several published co-localization analysis tools.

::DEVELOPER

Coloc-stats team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

NO

:: MORE INFORMATION

Citation:

Nucleic Acids Res. 2018 Jul 2;46(W1):W186-W193. doi: 10.1093/nar/gky474.
Coloc-stats: a unified web interface to perform colocalization analysis of genomic features.
Simovski B1,et al.

Consensus 20040414 – Web Interface for Finding DNA and Protein Patterns

Consensus 20040414

:: DESCRIPTION

Consensus Server determines consensus patterns in unaligned sequences. The algorithm is based on a matrix representation of a consensus pattern.

::DEVELOPER

Stormo Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Consensus

:: MORE INFORMATION

Citation

Bioinformatics. 1999 Jul-Aug;15(7-8):563-77.
Identifying DNA and protein patterns with statistically significant alignments of multiple sequences.
Hertz GZ, Stormo GD.

wwwPartiGene 0.1 – Building a Web Interface to Partigene Databases

wwwPartiGene 0.1

:: DESCRIPTION

WebPartiGene is a tool that generates HTML, php and CGI scripts that together form a web based interface to PartiGene relational databases. WebPartiGene allows specific clusters to be retrieved from the PartiGene database by entering either a cluster identifier or an EST idenitifier. The BLAST annotation text can also be searched and limited by BLAST score. Selected clusters are displayed in graphical format, showing the alignment of constituent sequences. The display includes links to full BLAST reports, phrap assembly quality files and public depository database files. WebPartiGene is full compatible with mulit-species PartiGene databases.

::DEVELOPER

The Blaxter Lab at The Institute of Evolutionary Biology University of Edinburgh

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Web server

:: DOWNLOAD

wwwPartiGene

:: MORE INFORMATION

N/A