:: DESCRIPTION
CAPITAL is a computational method for comparing pseudotime trajectories with tree alignment whereby trajectories including branchings can be automatically compared.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
:: DESCRIPTION
Cube finds both overall conserved and sub-family specific residues for the user-uploaded sets of protein sequences
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
PLoS One. 2013 Nov 20;8(11):e79480. doi: 10.1371/journal.pone.0079480.
Cube – an online tool for comparison and contrasting of protein sequences.
Zhang ZH, Khoo AA, Mihalek I.
:: DESCRIPTION
NetworkBLAST analyzes protein interaction networks across species to infer protein complexes that are conserved in evolution.
For comparing multiple networks use Networkblast-M;
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2008 Feb 15;24(4):594-6. doi: 10.1093/bioinformatics/btm630. Epub 2008 Jan 2.
NetworkBLAST: comparative analysis of protein networks.
Kalaev M1, Smoot M, Ideker T, Sharan R.
:: DESCRIPTION
The CAMBerVis software is a tool to visualize inconsistencies in genome structure annotations among bacterial strains. It is based on the idea introduced by CAMBer.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Michal Wozniak, Limsoon Wong and Jerzy Tiuryn
CAMBerVis: visualization software to support comparative analysis of multiple bacterial strains
Bioinformatics (2011) 27 (23): 3313-3314.
:: DESCRIPTION
CAMBer unifies annotations of closely related species by homology transfer. It produces what we called multigene families. Each multigene family reveals genes that are in one-to-one correspondence in the bacterial strains, thereby permitting their annotations to be integrated. In our paper we present more details and results of our method applied to three human pathogens: Escherichia coli, Mycobacterium tuberculosis and Staphylococcus aureus.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Michal Wozniak, Limsoon Wong and Jerzy Tiuryn
CAMBer: an approach to support comparative analysis of multiple bacterial strains
BMC Genomics 2011, 12(Suppl 2):S6
:: DESCRIPTION
ILPMap is a software of constructing consensus genetic maps in comparative analysis.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
X. Chen and J. Yang.
Constructing Consensus Genetic Maps in Comparative Analysis.
J Comput Biol. 2010 Nov;17(11):1561-73. Epub 2010 Oct 20.
