MixNet 1.1.2 / MixeR 1.9 – Analyzes Biological Networks using Mixture Models

MixNet 1.1.2 / MixeR 1.9

:: DESCRIPTION

MixNet (Erdös-Renyi Mixture for Networks) is the first publicly available computer software that analyzes biological networks using mixture models.This model is based on the hypothesis that real networks are made of classes which show specific connectivity patterns.

The MixeR allows the use of the basical options of MixNet software and the post-treatment of the results.

::DEVELOPER

SSB group.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX
  • C Complier / R package

:: DOWNLOAD

 MixNet / MixeR

:: MORE INFORMATION

Citation

Picard, F., Miele, V., Daudin,J-J., Cottret,L., Robin, S.,
Deciphering the connectivity structure of biological networks using MixNet,
MC Bioinformatics. 2009 Jun 16;10 Suppl 6:S17. doi: 10.1186/1471-2105-10-S6-S17.

ORIOGEN 4.01 – Analyzes Gene Expression data obtained from Time-course/Dose-response studies

ORIOGEN 4.01

:: DESCRIPTION

ORIOGEN (Order Restricted Inference for Ordered Gene Expression) analyzes gene expression data obtained from time-course/dose-response studies.

::DEVELOPER

ShareShyamal D. Peddada, Ph.D.

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows /MacOsX
  • Java 

:: DOWNLOAD

 ORIOGEN

:: MORE INFORMATION

Citation:

Bioinformation. 2007 Apr 10;1(10):414-9.
Order-restricted inference for ordered gene expression (ORIOGEN) data under heteroscedastic variances.
Simmons SJ, Peddada SD.