:: DESCRIPTION
bilinear.fit is a suite of S-PLUS routines for preforming bilinear regression fits to 16O/18O isotope labeling of experiments
::DEVELOPER
Division of Biomedical Statistics and Informatics, Mayo Clinic
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
SCANSTAT considers a number of marker loci in the genome. At each marker, genotypes are available for two types of observations
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Scan statistics to scan markers for susceptibility genes.
Hoh J, Ott J.
Proc Natl Acad Sci U S A. 2000 Aug 15;97(17):9615-7.
:: DESCRIPTION
The Tlinkage programs described here are an extension of the general LINKAGE programs for genetic linkage analysis. The extension consists of allowing for a disease phenotype to be under the control of two loci. The current version (20 Apr 2007) corrected a bug that had an effect only with relatively large numbers of alleles at the marker loci.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Schork NJ, Boehnke M, Terwilliger JD, Ott J (1993)
Two trait locus linkage analysis: a powerful strategy for mapping complex genetic traits.
Am J Hum Genet 53, 1127-1136
:: DESCRIPTION
HAPPY estimates haplotype-specific odds ratios from genotype data on unrelated cases and controls using unconditional logistic regression. It can adjust for the main effects of relevant covariates and estimate stratum-specific haplotype effects.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genet Epidemiol. 2005 Apr;28(3):261-72.
Accounting for haplotype uncertainty in matched association studies: a comparison of simple and flexible techniques.
Kraft P, Cox DG, Paynter RA, Hunter D, De Vivo I.
:: DESCRIPTION
GECOR is a software for calculating sample sizes in matched case-control studies examining genetic and environmental factors,and/or gene-environment interaction. It allows for sample size calculations for the main effects of geneand/or environment, as well as gene-environment interaction.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
PowerGxE is a SAS Macro for power calculations for genetic association tests exploiting gene-environment interaction
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Hum Hered. 2007;63(2):111-9. Epub 2007 Feb 2.
Exploiting gene-environment interaction to detect genetic associations.
Kraft P, Yen YC, Stram DO, Morrison J, Gauderman WJ.
:: DESCRIPTION
GEmis (Gene-Environment Dependence and Misclassification) is a software of power calculations for gene-environment tests incorporating misclassified exposures
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Hum Hered. 2009;68(3):171-81. doi: 10.1159/000224637. Epub 2009 Jun 11.
The impact of gene-environment dependence and misclassification in genetic association studies incorporating gene-environment interactions.
Lindström S, Yen YC, Spiegelman D, Kraft P.
:: DESCRIPTION
SUMSTAT considers a number of marker loci in the genome. At each marker, genotypes are available for two types of observations
sumstatQ represents a modification of the sumstat program in that it works with quantitative phenotypes (QTLs) rather than case-control type data. The datafile structure is the same as for sumstat but after the input lines containing genotype data, one or more QTLs can be present, one per input line for each individual.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Ott J, Hoh J (2012)
Scan statistics in human gene mapping.
Am J Hum Genet 91, 970 (letter)
:: DESCRIPTION
AutocorQ is a simple software to characterise and test the spatial autocorrelation of quantitative traits. It computes Moran’s I statistics, can provide pairwise autocorrelation coefficient between individuals, and computes the slope of the linear regression of these coefficients on the spatial distance or its logarithm. The significance of the coefficients is assessed by random permutation tests.
::DEVELOPER
Olivier Hardy @ Evolutionary Biology & Ecology, Université Libre de Bruxelles
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
BiodivR is designed to characterise species diversity within samples as well as species similarity between samples using sub-sampling (rarefaction) procedures. The statistics proposed account for the non-exhaustive sampling of species to get estimates unbiased with respect to the sizes (numbers of individuals recorded) of the samples.
::DEVELOPER
Evolutionary Biology & Ecology, Université Libre de Bruxelles
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
