SUMSTAT / SumstatQ – Sum Statistics for multi-locus Genetic Association Mapping

SUMSTAT / SumstatQ

:: DESCRIPTION

SUMSTAT considers a number of marker loci in the genome. At each marker, genotypes are available for two types of observations

sumstatQ represents a modification of the sumstat program in that it works with quantitative phenotypes (QTLs) rather than case-control type data. The datafile structure is the same as for sumstat but after the input lines containing genotype data, one or more QTLs can be present, one per input line for each individual.

::DEVELOPER

Jurg Ott, Ph.D.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux

:: DOWNLOAD

 SUMSTAT / SumstatQ 

:: MORE INFORMATION

Citation

Ott J, Hoh J (2012)
Scan statistics in human gene mapping.
Am J Hum Genet 91, 970 (letter)

P2S 20150226 – Converting files from Plink to Sumstat format

P2S 20150226

:: DESCRIPTION

P2S is a small utility program to convert formats from plink to sumstat and vice versa.The plink program uses the LINKAGE input format, which is a widely used format in genetic linkage and association analysis. The sumstat suite of programs has been developed using a different input format. Specifically, it lists each SNP on a separate input line (row) rather than an input column.

::DEVELOPER

Jurg Ott, Ph.D.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 P2S

:: MORE INFORMATION