SUMSTAT / SumstatQ – Sum Statistics for multi-locus Genetic Association Mapping

SUMSTAT / SumstatQ

:: DESCRIPTION

SUMSTAT considers a number of marker loci in the genome. At each marker, genotypes are available for two types of observations

sumstatQ represents a modification of the sumstat program in that it works with quantitative phenotypes (QTLs) rather than case-control type data. The datafile structure is the same as for sumstat but after the input lines containing genotype data, one or more QTLs can be present, one per input line for each individual.

::DEVELOPER

Jurg Ott, Ph.D.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux

:: DOWNLOAD

 SUMSTAT / SumstatQ 

:: MORE INFORMATION

Citation

Ott J, Hoh J (2012)
Scan statistics in human gene mapping.
Am J Hum Genet 91, 970 (letter)

ELA – Genetic Association Mapping method for Complex Diseases

ELA

:: DESCRIPTION

ELA (Ensemble Learning Approach) implements a genetic association mapping method for complex diseases.The program allows missing genotypes and can deal with very large number of markers.

::DEVELOPER

Shuanglin Zhang

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux

:: DOWNLOAD

 ELA

:: MORE INFORMATION

Citation:

Zhaogong Zhang, Shuanglin Zhang, Man-Yu Wong, Nicholas J. Wareham, Qiuying Sha (2007)
An Ensemble Learning Approach Jointly Modeling Main and Interaction Effects in Genetic Association Studies.
Genet Epidemiol. 2008 May;32(4):285-300.