PowerGxE – Power Calculations for Genetic Association Tests Exploiting Gene-environment Interaction

PowerGxE

:: DESCRIPTION

PowerGxE is a SAS Macro for power calculations for genetic association tests exploiting gene-environment interaction

::DEVELOPER

Peter Kraft

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  MacOsX/ Windows
  • SAS

:: DOWNLOAD

 PowerGxE

:: MORE INFORMATION

Citation:

Hum Hered. 2007;63(2):111-9. Epub 2007 Feb 2.
Exploiting gene-environment interaction to detect genetic associations.
Kraft P, Yen YC, Stram DO, Morrison J, Gauderman WJ.

VCGE – Gene-environment Interaction with Varying Coefficient Model

VCGE

:: DESCRIPTION

VCGE is an R code for gene-environment interaction with varying coefficient model.

::DEVELOPER

Yuehua Cui, Ph.D.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux
  • R

:: DOWNLOAD

 VCGE

:: MORE INFORMATION

Citation:

Bioinformatics. 2011 Aug 1;27(15):2119-26. doi: 10.1093/bioinformatics/btr318. Epub 2011 Jun 20.
Varying coefficient model for gene-environment interaction: a non-linear look.
Ma S1, Yang L, Romero R, Cui Y.

BaDGE 1.1.7 – Bayesian model for Detecting Gene Environment interaction

BaDGE 1.1.7

:: DESCRIPTION

BaDGE is a R package implementing the Bayeisan model for detecting gene environment interaction

::DEVELOPER

 DCEG

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Windows/MacOsX
  • R package

:: DOWNLOAD

 BaDGE

:: MORE INFORMATION

Citation

Yu K , Wacholder S , Wheeler W , Wang Z , Caporaso N , et al. 2012
A Flexible Bayesian Model for Studying Gene–Environment Interaction.
PLoS Genet 8(1): e1002482.

GEI-TRIMM – Gene-environment Interaction Triad Multi-marker Method

GEI-TRIMM

:: DESCRIPTION

GEI-TRIMM(gene-environment interaction triad multi-marker method) is a software of testing haplotype-environment interactions using case-parent triads

::DEVELOPER

Min Shi, M.D., Ph.D.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 GEI-TRIMM

:: MORE INFORMATION

Citation:

Shi M, Umbach DM, Weinberg CR 2010
Testing Haplotype-Environment Interactions Using Case-parent Triads.”
Hum Hered. 2010;70(1):23-33. Epub 2010 Apr 23.