:: DESCRIPTION
SyncX CT Aligner is a computer method to compensate for the vibration of the rotational holder by aligning neighboring X-ray images.
::DEVELOPER
Chang-Chieh Cheng, Ph.D.
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Image alignment for tomography reconstruction from synchrotron X-ray microscopic images.
Cheng CC, Chien CC, Chen HH, Hwu Y, Ching YT.
PLoS One. 2014 Jan 9;9(1):e84675. doi: 10.1371/journal.pone.0084675.
:: DESCRIPTION
Packing Analyzer detects the geometry of epithelial tissues
::DEVELOPER
Benoit Aigouy (scientifig@gmail.com)
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
ScientiFig is a free tool to help you create, format or reformat scientific figures
::DEVELOPER
Benoit Aigouy (scientifig@gmail.com)
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Nat Methods. 2013 Nov;10(11):1048. doi: 10.1038/nmeth.2692.
ScientiFig: a tool to build publication-ready scientific figures.
Aigouy B1, Mirouse V.
:: DESCRIPTION
NucleusJ is a simple and user-friendly ImageJ plugin dedicated to the characterization of nuclear morphology and chromatin organization in 3D.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei.
Poulet A, Arganda-Carreras I, Legland D, Probst AV, Andrey P, Tatout C.
Bioinformatics. 2014 Nov 20. pii: btu774.
:: DESCRIPTION
MorphoGraphX is a cross-platform, open-source application for the visualization and processing of 3D biological datasets.
::DEVELOPER
Richard S. Smith ,Systems Biology/Developmental Modeling
:: SCREENSHOTS
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Methods Mol Biol. 2014;1080:121-34. doi: 10.1007/978-1-62703-643-6_10.
Quantifying cell shape and gene expression in the shoot apical meristem using MorphoGraphX.
de Reuille PB1, Robinson S, Smith RS.
Daniel Kierzkowski et al.
Elastic Domains Regulate Growth and Organogenesis in the Plant Shoot Apical Meristem
Science 2 March 2012: Vol. 335 no. 6072 pp. 1096-1099
:: DESCRIPTION
Fluorescence Spectraviewer is a software to plot and compare spectra, check the spectral compatibility for many fluorophores and email the configuration to yourself or others in the lab in a clear printable format.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
Fluorescence Spectraviewer for iPhone
:: MORE INFORMATION
:: DESCRIPTION
RegStatGel is a proteomic software for identifying differentially expressed proteins based on 2D gel images.
::DEVELOPER
Feng Li (feng.li@fda.hhs.gov)
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformation. 2011;6(10):389-90. Epub 2011 Aug 2.
RegStatGel: proteomic software for identifying differentially expressed proteins based on 2D gel images.
Li F, Seillier-Moiseiwitsch F.
:: DESCRIPTION
Bio-Formats is a standalone Java library for reading and writing life sciences image file formats. It is capable of parsing both pixels and metadata for a large number of formats, as well as writing to several formats. See the table below for a complete list (click the headers to sort, and format names to see all information).
Bio-Formats’s primary purpose is to convert proprietary microscopy data into an open standard called the OME data model, particularly into the OME-TIFF file format.
::DEVELOPER
development teams at The Open Microscopy Environment,
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
NucType is tool to measure distances/size of chromosomes, group the chromosomes and analysis the karyotype (karyotype asymmetry indices). Additionally it has a tool to measure the pollen or leaves.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Frida (FRamework for Image Dataset Analysis) is image analysis software. Frida was developed by the Johns Hopkins University Tissue Microarray Core Facility. Frida is open source and written in 100% Java. Frida makes use of functionality from the NIH’s ImageJ application.
::DEVELOPER
JHU Tissue MicroArray Core Facility
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Cornish T, Morgan J, Gurel B, and De Marzo AM.
FrIDA: An open source framework for image dataset analysis.
Arch. Pathol. Lab. Med. 132:856 (2008). Originally presented at Advancing Practice, Instruction and Innovation Through Informatics: Pittsburgh, PA, 2007.