ScientiFig v2.99 – Build Publication-ready Scientific Figures

ScientiFig v2.99

:: DESCRIPTION

ScientiFig is a free tool to help you create, format or reformat scientific figures

::DEVELOPER

Benoit Aigouy (scientifig@gmail.com)

:: SCREENSHOTS

ScientiFig

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • Java
  • ImageJ / FIJI

:: DOWNLOAD

 ScientiFig

:: MORE INFORMATION

Citation

Nat Methods. 2013 Nov;10(11):1048. doi: 10.1038/nmeth.2692.
ScientiFig: a tool to build publication-ready scientific figures.
Aigouy B1, Mirouse V.

ECplot v2.0 – Making Standardized Plots from large datasets for Bioinformatics Publications

ECplot v2.0

:: DESCRIPTION

ECplot is an online tool for plotting charts from large datasets. This tool supports a variety of chart types commonly used in bioinformatics publications.

::DEVELOPER

Kevin Yuk-Lap Yip

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 ECplot 

:: MORE INFORMATION

Citation

Bioinformatics. 2014 May 15;30(10):1467-8. doi: 10.1093/bioinformatics/btu038. Epub 2014 Jan 24.
ECplot: an online tool for making standardized plots from large datasets for bioinformatics publications.
Fok AC1, Mok SS, Lee SD, Yip KY.

PubNet – Publication Network Graph Utility

PubNet

:: DESCRIPTION

 PubNet is a utility that extracts several types of relationships returned by PubMed queries and maps them into networks, allowing for graphical visualization, textual navigation, and topological analysis. PubNet supports the creation of complex networks derived from the contents of individual citations, such as genes, proteins, Protein Data Bank (PDB) IDs, Medical Subject Headings (MeSH) terms, and authors.

::DEVELOPER

Gerstein Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

NO

:: MORE INFORMATION

Citation

PubNet: a flexible system for visualizing literature derived networks.
SM Douglas, GT Montelione, M Gerstein (2005).
Genome Biol 6:R80.

pubmed2ensembl – Link Publications in PubMed to Genes in Ensembl

pubmed2ensembl

:: DESCRIPTION

pubmed2ensembl is an extension to the BioMart system that links over 2,000,000 articles in PubMed to nearly 150,000 genes in Ensembl from 50 species.

::DEVELOPER

the Nenadic group & the Bergman lab.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Perl
  • Java
  • BioMart

:: DOWNLOAD

 pubmed2ensembl

:: MORE INFORMATION

Citation

PLoS One. 2011;6(9):e24716. Epub 2011 Sep 29.
pubmed2ensembl: a resource for mining the biological literature on genes.
Baran J, Gerner M, Haeussler M, Nenadic G, Bergman CM.