ViQuaS is based on a novel reference-assisted de novo assembly algorithm for constructing local haplotypes. A significantly extended version of an existing global strain reconstruction algorithm is also used.
Fluorescence Spectraviewer is a software to plot and compare spectra, check the spectral compatibility for many fluorophores and email the configuration to yourself or others in the lab in a clear printable format.
EagleEye removes background MS/MS spectra by comparing them with a non-annotated collection of spectra, obtained from combined LC-MS/MS runs of control in-gel digests as well as identified in on-going proteomis projects.
CalSpec (Calculate Spectra) is a software module for fast processing of mass spectrometric data in 13C Metabolic Flux Analysis(MFA). Efficient MFA requires a straightforward approach that can be parallelized and automated for all steps involved. A time-consuming and error prone step in the whole procedure of MFA is the extraction of labeling patterns from mass spectrometric spectra. CalSpec for identification of amino acids TBDMS derivates, addresses this problem and provides a software module for automated identification of specified analytes in the MS spectrum, quantification of labeling patterns and estimation of the analyte peak quality.
Peak Explorer is intended for automatic processing of spectra, and also any plots having strongly expressed local maxima (peaks). The program automatically locates a position of the peak center of gravity (Center), coordinates X and Y of the top point of the peak ((x,y) of Top Point), calculates peak area (Area), standard deviation (sd(Area)) of Area (sd(Area)=) locates left (Left Border) and right (Right Border) boundaries of the peak and draws a linear background under the peak (Background). The Input Data Table and Grapher are situated in the Input Data window.