Category: Cytometry / Cell

TLM-Tracker – Single Cell analyses in Live-cell Imaging experiments

TLM-Tracker

:: DESCRIPTION

TLM-Tracker (Time-Lapse-Movie-Tracker) is a free platform independent tool for single cell analyses in live-cell imaging experiments like time lapse microscopy. It allows for the flexible and user friendly segmentation, tracking and lineage analysis of microbial cells in time-lapse movies.

::DEVELOPER

TLM-Tracker Team

:: SCREENSHOTS

TLM-Tracker

:: REQUIREMENTS

:: DOWNLOAD

 TLM-Tracker

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Sep 1;28(17):2276-7. doi: 10.1093/bioinformatics/bts424. Epub 2012 Jul 5.
TLM-Tracker: software for cell segmentation, tracking and lineage analysis in time-lapse microscopy movies.
Klein J, Leupold S, Biegler I, Biedendieck R, Münch R, Jahn D.

CellTrack – Cell Tracking and Motility Analysis

CellTrack

:: DESCRIPTION

CellTrack is a self-contained, extensible, and cross-platform software package for cell tracking and motility analysis.

::DEVELOPER

Sacan Bioinformatics Lab

:: SCREENSHOTS

CellTrack

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • C++ COmpiler

:: DOWNLOAD

 CellTrack

:: MORE INFORMATION

Citation

Bioinformatics. 2008 Jul 15;24(14):1647-9. doi: 10.1093/bioinformatics/btn247. Epub 2008 May 29.
CellTrack: an open-source software for cell tracking and motility analysis.
Sacan A, Ferhatosmanoglu H, Coskun H.

Flow Cytometer Simulator – Simulation of a Working Flow Cytometer

Flow Cytometer Simulator

:: DESCRIPTION

Flow Cytometer Simulator provides a simulation of a working flow cytometer.  It was developed to illustrate issues with color compensation, but also provides insight into many other attributes of flow cytometers.

::DEVELOPER

Verity Software House

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

Flow Cytometer Simulator

:: MORE INFORMATION

TestDNA – Generates FCS Histograms of Cell Cycle Data

TestDNA

:: DESCRIPTION

TestDNA is a utility that generates FCS histograms of cell cycle data with known component values. Using its batch mode you can generate thousands of histogram files with the click of a button.

::DEVELOPER

Verity Software House

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

TestDNA

:: MORE INFORMATION

FCSViewer 2.0 – Decompresses FCS data files for Display

FCSViewer 2.0

:: DESCRIPTION

FCSViewer program is to decompress a file with Zeiss Fluorescence Correlation Spectroscopy (FCS) data (in either ConfoCor 2 or ConfoCor 3 formats) and display the two channels.  In addition, time “calipers” can be used to select and enlarge any time interval, and this can be repeated until the full resolution of the data is displayed.

::DEVELOPER

Earl F Glynn

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

  FCSViewer , Source Code, for R

:: MORE INFORMATION

Distributed under GNU General Public License
www.gnu.org/licenses/gpl.txt

FCSExtract 1.02 – Extracts Flow Cytometry data from binary FCS files

FCSExtract 1.02

:: DESCRIPTION

FCSExtract utility is to extract Flow Cytometry Standard (FCS) data from a binary FCS file and convert it to an ASCII text format, which can be read by a variety of software analysis packages.

::DEVELOPER

Earl F Glynn 

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 FCSExtract , Source Code

:: MORE INFORMATION

MFI 3.4kb8 – Analysis of Flow Cytofluorometry Data

MFI 3.4kb8

:: DESCRIPTION

MFI (Median Fluorescence Intensity ) is Software for Analysis of Flow Cytofluorometry Data. MFI was created to obtain corrected median fluorescence intensities quickly from large numbers of flow cytometry listmode data files.

::DEVELOPER

Eric Martz

:: SCREENSHOTS

Command Line

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

MFI ; Source Code

:: MORE INFORMATION

Development of the MFI program stopped in 1996 at version 3.4kb8. No further enhancements will be released by MFI’s author Eric Martz.

LDATAPP 2.0 – Convert FCS data to ASCII text

LDATAPP 2.0

:: DESCRIPTION

LDATAPP dumps FCS listmode or histogram data into ASCII text files. It has a simple interface to select input files and output paths. It requires a 32 bit Microsoft Windows operating system.

::DEVELOPER

Purdue University Cytometry Laboratories

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

LDATAPP

:: MORE INFORMATION

For more information contact:
J. Paul Robinson, Ph.D., Director PUCL, Hansen Hall, B050, Purdue University, West Lafayette, IN 47907, USA Phone: (765)494-0757, Email tojpr@flowcyt.cyto.purdue.edu

RefreshRatio 4.0 – Refresh Ratios in Flow Cytometry List-Files

RefreshRatio 4.0

:: DESCRIPTION

RefreshRatio is a software to refresh ratios in (BD) FCS (Flow Cytometry) list-files.

::DEVELOPER

AMC, CMO, Amsterdam, The Netherlands – Contact: R.A.Hoebe -at- amc.nl

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

RefreshRatio

:: MORE INFORMATION

This software is free to anyone, just for fun send author a postcard:
AMC, Cell biology & Histology CMO, Ron Hoebe, Room M3-106-1
Meibergdreef 15, 1105 AZ  Amsterdam, The Netherlands