Fragment Merger Tool – Merge Overlapping Long Sequence Fragments

Fragment Merger Tool

:: DESCRIPTION

The Fragment Merger Tool produces a single (merged) sequence from two to twelve overlapping input fragments. These fragments can be chromatograms (ABIF files in .ab1 format) or FASTA files, or a mixture of both.

::DEVELOPER

Dr Trevor Bell [Trevor.Bell (@) wits.ac.za]

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

Bell, T. G. and Kramvis, A. (2013)
Fragment Merger: An online tool to merge overlapping long sequence fragments.
Viruses 5: 824-833.

MyBioNet – Visualize, Edit and Merge Biological Networks

MyBioNet

:: DESCRIPTION

Mybionet is a web-based application of biological networks, allowing users to visualize, edit, merge biological networks and search, navigate KEGG metabolic networks.

::DEVELOPER

BIS @ Zhejiang University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web BRowser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Dec 1;27(23):3321-2. doi: 10.1093/bioinformatics/btr557.
MyBioNet: interactively visualize, edit and merge biological networks on the web.
Huang D, Huang Y, Bai Y, Chen D, Hofest?dt R, Klukas C, Chen M.

Reconciliator 2.0 – The tool for Merging Assemblies

Reconciliator 2.0

:: DESCRIPTION

Reconciliator is the tool for merging assemblies.

::DEVELOPER

IPST GENOME ASSEMBLY GROUP

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Reconciliator

:: MORE INFORMATION

Citation

Bioinformatics. 2008 Jan 1;24(1):42-5. Epub 2007 Dec 5.
Assembly reconciliation.
Zimin AV, Smith DR, Sutton G, Yorke JA.

C3P/CCCPart – Merging Two or More Graphs Representing Biological Data

C3P/CCCPart

:: DESCRIPTION

C3P is a package to compute the Common Connected Components (CCC) of a multigraph.

::DEVELOPER

Alain Viari

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Darwin/Solaris/Irix

:: DOWNLOAD

 C3P

:: MORE INFORMATION

Citation

Bioinformatics. 2005 Dec 1;21(23):4209-15. Epub 2005 Oct 10.
Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data.
Boyer F, Morgat A, Labarre L, Pothier J, Viari A.

MicroMerge 2.0 – Merge Microsatellite Genotype Data Sets

MicroMerge 2.0

:: DESCRIPTION

MicroMerge automates merging of microsatellite data sets that were genotyped at different facilities or using different protocols or platforms. The software employs a Bayesian statistical model that matches allele frequencies between data sets (Presson et al. 2006). MicroMerge v2.0 enables the following aspects of control: 1) output file formats which can be handled by most statistical genetic analysis packages, 2) tailoring the algorithm to different merging scenarios, such as data sets with very different sample sizes or multiple data sets, 3) merging small data sets when a reliable set of allele frequencies are available, and 4) improving the quantity and 5) quality of merged data.

::DEVELOPER

Angela P. Presson (micromerge@genetics.ucla.edu), UCLA Human Genetics

:: SCREENSHOTS

Command Line

:: REQUIREMENTS

  • Windows /  Linux

:: DOWNLOAD

MicroMerge

:: MORE INFORMATION

Citation:

Angela P Presson , Eric M Sobel , Paivi Pajukanta , Christopher Plaisier , Daniel E Weeks , Karolina Åberg and Jeanette C Papp (2008)
Merging microsatellite data: enhanced methodology and software to combine genotype data for linkage and association analysis
BMC Bioinformatics 2008, 9:317