topaln 0.1 – Topological Alignments for Cell Tracking

topaln 0.1

:: DESCRIPTION

topaln implements an integer linear programming approach for topologically aligning two segmented images as the linking step in cell tracking.

::DEVELOPER

Hang Xiao and Axel Mosig, THE RUB BIOINFORMATICS GROUP

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux /MacOsX
  • C++ Compiler

:: DOWNLOAD

topaln

:: MORE INFORMATION

Citation

Algorithms Mol Biol. 2009 Jul 16;4:10. doi: 10.1186/1748-7188-4-10.
Tracking cells in Life Cell Imaging videos using topological alignments.
Mosig A, Jäger S, Wang C, Nath S, Ersoy I, Palaniappan KP, Chen SS.

CellTrack – Cell Tracking and Motility Analysis

CellTrack

:: DESCRIPTION

CellTrack is a self-contained, extensible, and cross-platform software package for cell tracking and motility analysis.

::DEVELOPER

Sacan Bioinformatics Lab

:: SCREENSHOTS

CellTrack

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • C++ COmpiler

:: DOWNLOAD

 CellTrack

:: MORE INFORMATION

Citation

Bioinformatics. 2008 Jul 15;24(14):1647-9. doi: 10.1093/bioinformatics/btn247. Epub 2008 May 29.
CellTrack: an open-source software for cell tracking and motility analysis.
Sacan A, Ferhatosmanoglu H, Coskun H.