abPOA v1.2.5 – adaptive banded Partial Order Alignment

abPOA v1.2.5

:: DESCRIPTION

abPOA is an extended version of Partial Order Alignment (POA) that performs adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA can perform multiple sequence alignment (MSA) on a set of input sequences and generate a consensus sequence by applying the heaviest bundling algorithm to the final alignment graph.

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::DEVELOPER

Yan Gao

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

abPOA

:: MORE INFORMATION

Citation

Gao Y, Liu Y, Ma Y, Liu B, Wang Y, Xing Y.
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band.
Bioinformatics. 2021 Aug 9;37(15):2209-2211. doi: 10.1093/bioinformatics/btaa963. Erratum in: Bioinformatics. 2021 Sep 03;: PMID: 33165528.

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