abPOA v1.2.5
:: DESCRIPTION
abPOA is an extended version of Partial Order Alignment (POA) that performs adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA can perform multiple sequence alignment (MSA) on a set of input sequences and generate a consensus sequence by applying the heaviest bundling algorithm to the final alignment graph.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Python
:: DOWNLOAD
:: MORE INFORMATION
Citation
Gao Y, Liu Y, Ma Y, Liu B, Wang Y, Xing Y.
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band.
Bioinformatics. 2021 Aug 9;37(15):2209-2211. doi: 10.1093/bioinformatics/btaa963. Erratum in: Bioinformatics. 2021 Sep 03;: PMID: 33165528.