WinBioinfTools 1.0 – Bioinformatics Tools for Windows High Performance Computing Server

WinBioinfTools 1.0

:: DESCRIPTION

WinBioinfTools contains a number of programs for Bioinformatics running over Windows Cluster running Windows HPC server 2008.
1) CoCoNUT for pairwise genome comparison, 2) parallel BLAST for biological database search, and 3) parallel global pairwise sequence alignment.

::DEVELOPER

Mohamed Abouelhoda, Hisham Mohamed

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  •  Microsoft  HPC server 2008

:: DOWNLOAD

 WinBioinfTools

:: MORE INFORMATION

Citation

Mohamed I. Abouelhoda and Hisham Mohamed.
WinBioinfTools: Bioinformatics Tools for Windows High Performance Computing Server 2008.
Technical Report. Computing Research Repository,

WinBlast 0.2.0 – Windows Fraphical Front-end for NCBI BLAST

WinBlast 0.2.0

:: DESCRIPTION

WinBlast is a Windows graphical front-end for NCBI BLAST. It is written completely in C#, utilizing Microsofts latest .NET framework.

::DEVELOPER

Alan Li (alanli@bioinformatics.org)

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 WinBlast

:: MORE INFORMATION

WPDB 2.2 – The Protein Data Bank Through Windows

WPDB 2.2

:: DESCRIPTION

WPDB is a Microsoft Windows based program for browsing and interrogating native and derived structural features of biological macromolecules using data obtained from the Protein Data Bank (PDB). Major features of WPDB are a 20-fold compression of PDB files and query and analysis tools. The latter permit the geometric and sequence properties of structures to be analyzed individually or through comparative analysis. The object oriented software design provides a high level of interaction between display windows which facilitates information discovery.

WPDB is useful for detailed analysis of a single structure or comparative analysis of two or more structures. It comes with a variety of databases. Alternatively, you can build your own database from PDB files with the WPDB Loader (WPDBL).

WPDBL Used to build a WPDB database from PDB files for access by the WPDB program. Prebuilt databases of a complete PDB distribution are available already built in the ../ directory.

::DEVELOPER

Ilya Shindyalov and Phil Bourne

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

WPDB ; WPDBL

:: MORE INFORMATION

Those using WPDB should cite:
I.N.Shindyalov and P.E.Bourne J. App. Cryst. 1995, 28(6) 847-852. WPDB A PC-based Tool for Analyzing Protein Structure. [Postscript]