Tag: NCBI BLAST

ScalaBLAST 2.4.53 – Multiprocessor Implementation of the NCBI BLAST library

ScalaBLAST 2.4.53

:: DESCRIPTION

ScalaBLAST is a high-performance multiprocessor implementation of the NCBI BLAST library. ScalaBLAST supports all 5 primary program types (blastn, blastp, tblastn, tblastx, and blastx) and several output formats (pairwise, tabular, or XML).

:: DEVELOPER

Computational Biology & Bioinformatics ,Pacific Northwest National Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • gcc
  • MPI

:: DOWNLOAD

 ScalaBLAST

:: MORE INFORMATION

Citation

Oehmen, C.S. and J. Nieplocha. 2006.
“ScalaBLAST: A scalable implementation of BLAST for high-performance data-intensive bioinformatics analysis“,
IEEE Transactions on Parallel and Distributed Systems, 17(8): 740-749.

Bioinformatics. 2013 Mar 15;29(6):797-8. doi: 10.1093/bioinformatics/btt013. Epub 2013 Jan 29.
ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems.
Oehmen CS, Baxter DJ.

NOBLAST 2.1 / JAMBLAST 1.10 – extended NCBI BLAST programs / Manager

NOBLAST 2.1 / JAMBLAST 1.10

:: DESCRIPTION

NoBlast provides a new extended user friendly csv output format and offers an option to correct the statistics when split databases are used for NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn and Tblastx).

JAMBLAST: Java Application Manager for the ncbi BLAST results. It is a graphic application that allow the user to display, filter, sort, import/export, store/manage BLAST results produced with the NOBLAST

::DEVELOPER

Jacques Lagnel (lagnel@her.hcmr.gr)

:: SCREENSHOTS

JAMBLAST

:: REQUIREMENTS

  • Windows/Linux
  • Java

:: DOWNLOAD

 NOBLAST, JAMBLAST 

:: MORE INFORMATION

Citation

Bioinformatics. 2009 Mar 15;25(6):824-6. doi: 10.1093/bioinformatics/btp067. Epub 2009 Jan 29.
NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results.
Lagnel J, Tsigenopoulos CS, Iliopoulos I.

RMBlast 2.10.0 – RepeatMasker compatible version of NCBI BLAST suite

RMBlast 2.10.0

:: DESCRIPTION

RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program “rmblastn” for use with RepeatMasker and RepeatModeler.

::DEVELOPER

RMBlast Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX

:: DOWNLOAD

 RMBlast

:: MORE INFORMATION

WinBlast 0.2.0 – Windows Fraphical Front-end for NCBI BLAST

WinBlast 0.2.0

:: DESCRIPTION

WinBlast is a Windows graphical front-end for NCBI BLAST. It is written completely in C#, utilizing Microsofts latest .NET framework.

::DEVELOPER

Alan Li (alanli@bioinformatics.org)

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 WinBlast

:: MORE INFORMATION