Webina 1.0.3 – A JavaScript/WebAssembly library that runs Vina in a browser

Webina 1.0.3

:: DESCRIPTION

Webina is a JavaScript/WebAssembly library that runs AutoDock Vina entirely in a web browser. The docking calculations take place on the user’s own computer rather than a remote server.

::DEVELOPER

Durrant Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

Webina

:: MORE INFORMATION

Citation

Webina: An Open-Source Library and Web App that Runs AutoDock Vina Entirely in the Web Browser
Yuri Kochnev, Erich Hellemann, Kevin C. Cassidy, View ORCID ProfileJacob D. Durrant
doi: https://doi.org/10.1101/2019.12.18.881789

GWOVina 1.0 – Fast Protein-ligand Docking tool based on GWO and AutoDock Vina

GWOVina 1.0

:: DESCRIPTION

Based on the implementation of AutoDock Vina, GWOVina employs grey wolf optimization (GWO) algorithm to speed up the search for optimal ligand poses.

::DEVELOPER

Computational Biology and Bioinformatics Lab (CBBio)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

GWOVina

:: MORE INFORMATION

Citation

Wong KM, Tai HK, Siu SWI.
GWOVina: A grey wolf optimization approach to rigid and flexible receptor docking.
Chem Biol Drug Des. 2021 Jan;97(1):97-110. doi: 10.1111/cbdd.13764. Epub 2020 Aug 10. PMID: 32679606; PMCID: PMC7818481.

PSOVina 2.0 – Fast Protein-ligand Docking tool based on PSO and AutoDock Vina

PSOVina 2.0

:: DESCRIPTION

PSOVina combines the particle swarm optimization (PSO) algorithm with the efficient Broyden-Fletcher-Goldfarb-Shannon (BFGS) local search method adopted in AutoDock Vina to tackle the conformational search problem in docking.

::DEVELOPER

Computational Biology and Bioinformatics Lab (CBBio)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

PSOVina

:: MORE INFORMATION

Citation

J Bioinform Comput Biol. 2015 Jun;13(3):1541007. doi: 10.1142/S0219720015410073. Epub 2015 Feb 10.
PSOVina: The hybrid particle swarm optimization algorithm for protein-ligand docking.
Ng MC, Fong S, Siu SW.