Webina 1.0.0 – A JavaScript/WebAssembly library that runs Vina in a browser

Webina 1.0.0

:: DESCRIPTION

Webina is a JavaScript/WebAssembly library that runs AutoDock Vina entirely in a web browser. The docking calculations take place on the user’s own computer rather than a remote server.

::DEVELOPER

Durrant Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

Webina

:: MORE INFORMATION

Citation

Webina: An Open-Source Library and Web App that Runs AutoDock Vina Entirely in the Web Browser
Yuri Kochnev, Erich Hellemann, Kevin C. Cassidy, View ORCID ProfileJacob D. Durrant
doi: https://doi.org/10.1101/2019.12.18.881789

Mason – JavaScript Widget for Viewing Sequence Features and Annotations

Mason

:: DESCRIPTION

Mason is a JavaScript and SVG-based viewer meant to display annotated regions or features of DNA and protein sequences.

::DEVELOPER

Mason team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • JavaScript

:: DOWNLOAD

 Mason

:: MORE INFORMATION

Citation

BMC Res Notes. 2015 Dec;8(1):1009. doi: 10.1186/s13104-015-1009-z. Epub 2015 Mar 7.
Mason: a JavaScript web site widget for visualizing and comparing annotated features in nucleotide or protein sequences.
Jaschob D1, Davis TN, Riffle M.

Protael 1.1.0 – JavaScript Library for Visualizing Biological Sequences and related data

Protael 1.1.0

:: DESCRIPTION

Protael is a vector graphics library for displaying various biological sequence related data on web pages.

::DEVELOPER

Godzik Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • JavaScript
:: DOWNLOAD

 Protael

:: MORE INFORMATION

Citation:

Protael: protein data visualization library for the web.
Sedova M, Jaroszewski L, Godzik A.
Bioinformatics. 2015 Oct 29. pii: btv605.

JSAV 2.0 – JavaScript Sequence Alignment Viewer

JSAV 2.0

:: DESCRIPTION

JSAV is a sequence alignment viewer written purely in JavaScript. It is extremely easy to include it in your code, but has many configuration options allowing you to control the functionality available to the user of your web site.

::DEVELOPER

Andrew C.R. Martin’s Bioinformatics Group at UCL

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux/ MacOsX
  • JavaScript

:: DOWNLOAD

  JSAV

:: MORE INFORMATION

Citation

F1000Res. 2014 Oct 23;3:249. doi: 10.12688/f1000research.5486.1. eCollection 2014.
Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV).
Martin AC

JBrowse 1.12.1 – JavaScript Genome Browser

 JBrowse 1.12.1

:: DESCRIPTION

JBrowse is a JavaScript genome browser with an emphasis on portability. JBrowse helps preserve the user’s sense of location by avoiding discontinuous transitions, instead offering smoothly animated panning, zooming, navigation, and track selection. Unlike most existing genome browsers, where the genome is rendered into images on the webserver and the role of the client is restricted to displaying those images, JBrowse distributes work between the server and client and therefore uses significantly less server overhead than previous genome browsers.

::DEVELOPER

Holmes lab at UC Berkeley

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

JBrowse

:: MORE INFORMATION

Citation:

JBrowse: a next-generation genome browser.
Skinner ME, Uzilov AV, Stein LD, Mungall CJ, Holmes IH.
Genome Res. 2009 Sep;19(9):1630-8. doi: 10.1101/gr.094607.109

GenomeD3Plot – SVG based Genome Viewer written in Javascript using D3

GenomeD3Plot

:: DESCRIPTION

GenomeD3Plot (formerly Islandplot) is an SVG based genome viewer written in javascript using D3

::DEVELOPER

Brinkman lab 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • javascript

:: DOWNLOAD

GenomeD3Plot

:: MORE INFORMATION

Citation:

GenomeD3Plot: A library for rich, interactive visualizations of genomic data in web applications.
Laird MR, Langille MG, Brinkman FS.
Bioinformatics. 2015 Jun 20. pii: btv376.

BioJS 2.0 – A library of JavaScript Components to Represent Biological Data

BioJS 2.0

:: DESCRIPTION

BioJS is an open-source project whose main objective is the visualization of biological data in JavaScript. BioJS provides an easy-to-use consistent framework for bioinformatics application programmers.

::DEVELOPER

BioJS team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

 BioJS

:: MORE INFORMATION

Citation

BioJS: an open source JavaScript framework for biological data visualization.
Gómez J, García LJ, Salazar GA, Villaveces J, Gore S, García A, Martín MJ, Launay G, Alcántara R, Del-Toro N, Dumousseau M, Orchard S, Velankar S, Hermjakob H, Zong C, Ping P, Corpas M, Jiménez RC.
Bioinformatics. 2013 Apr 15;29(8):1103-4.