iUbiq-Lys – Prediction of Lysine Ubiquitination sites in proteins

iUbiq-Lys

:: DESCRIPTION

The web-server iUbiq-Lys is a web server that could predict ubiquitination sites in proteins. With the assistance of SVM, the highlight of iUbiq-Lys is to employ amino acid sequence features extracted from the sequence evolution information via grey system model (Grey-PSSM).

::DEVELOPER

Xiao Lab

:: SCREENSHOTS

n/a

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

J Biomol Struct Dyn. 2014 Nov 6:1-12.
iUbiq-Lys: prediction of lysine ubiquitination sites in proteins by extracting sequence evolution information via a gray system model.
Qiu WR1, Xiao X, Lin WZ, Chou KC.

CKSAAP_UbSite / hCKSAAP_UbSite – A Predictor of Protein Ubiquitination sites

CKSAAP_UbSite / hCKSAAP_UbSite

:: DESCRIPTION

CKSAAP_UbSite (composition of k-spaced amino acid pairs) is a web server that could predict ubiquitination sites in proteins.

hCKSAAP_UbSite is a web server for improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties

::DEVELOPER

Ziding Zhang’s Lab, China Agricultural University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Server

:: DOWNLOAD

CKSAAP_UbSite / hCKSAAP_UbSite

:: MORE INFORMATION

Citation

Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. doi: 10.1016/j.bbapap.2013.04.006.
hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
Chen Z1, Zhou Y, Song J, Zhang Z.

RUBI 1.0 – Rapid UBIquitination Detection

RUBI 1.0

:: DESCRIPTION

RUBI is a new web server to detect regions of proteins which are thought to contain ubiquitinated lysines.

::DEVELOPER

The BioComputing UP lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

RUBI

:: MORE INFORMATION

Citation:

Amino Acids. 2014 Apr;46(4):853-62. doi: 10.1007/s00726-013-1645-3. Epub 2013 Dec 23.
RUBI: rapid proteomic-scale prediction of lysine ubiquitination and factors influencing predictor performance.
Walsh I1, Di Domenico T, Tosatto SC.