Tag: Lysine

Phogly-PseAAC – Prediction of Lysine Phosphoglycerylation in Proteins

Phogly-PseAAC

:: DESCRIPTION

Phogly-PseAAC is established for predicting lysine phosphoglycerylation sites in proteins incorporating with position-specific propensity.

::DEVELOPER

Yan Xu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

Phogly-PseAAC: Prediction of lysine phosphoglycerylation in proteins incorporating with position-specific propensity.
Xu Y, Ding YX, Ding J, Wu LY, Deng NY.
J Theor Biol. 2015 Apr 23. pii: S0022-5193(15)00179-4. doi: 10.1016/j.jtbi.2015.04.016

iSuc-PseAAC – Predicting Lysine Succinylation in proteins by incorporating Peptide Position-specific Propensity

iSuc-PseAAC

:: DESCRIPTION

The web-server iSuc-PseAAC is established for predicting the lysine succinylation sites in proteins.

::DEVELOPER

Yan Xu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

iSuc-PseAAC: predicting lysine succinylation in proteins by incorporating peptide position-specific propensity.
Xu Y, Ding YX, Ding J, Lei YH, Wu LY, Deng NY.
Sci Rep. 2015 Jun 18;5:10184. doi: 10.1038/srep10184.

iPTM-mLys – Identifying multiple Lysine PTM sites and their different types

iPTM-mLys

:: DESCRIPTION

The web-server iPTM-mLys is used to predict the identifying Lysine PTM sites and the modified type(s) in proteins.

::DEVELOPER

Xiao Lab

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Bioinformatics. 2016 Oct 15;32(20):3116-3123. doi: 10.1093/bioinformatics/btw380. Epub 2016 Jun 22.
iPTM-mLys: identifying multiple lysine PTM sites and their different types
Wang-Ren Qiu 1, Bi-Qian Sun 2, Xuan Xiao 3, Zhao-Chun Xu 2, Kuo-Chen Chou 4

iUbiq-Lys – Prediction of Lysine Ubiquitination sites in proteins

iUbiq-Lys

:: DESCRIPTION

The web-server iUbiq-Lys is a web server that could predict ubiquitination sites in proteins. With the assistance of SVM, the highlight of iUbiq-Lys is to employ amino acid sequence features extracted from the sequence evolution information via grey system model (Grey-PSSM).

::DEVELOPER

Xiao Lab

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

J Biomol Struct Dyn. 2014 Nov 6:1-12.
iUbiq-Lys: prediction of lysine ubiquitination sites in proteins by extracting sequence evolution information via a gray system model.
Qiu WR1, Xiao X, Lin WZ, Chou KC.

iSuc-PseOpt – Identifying lysine Succinylation Sites in proteins

iSuc-PseOpt

:: DESCRIPTION

The web-server iSuc-Opt used to predict the lysine succinylation in protein.

::DEVELOPER

Xiao Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

iSuc-PseOpt: Identifying lysine succinylation sites in proteins by incorporating sequence-coupling effects into pseudo components and optimizing imbalanced training dataset.
Jia J, Liu Z, Xiao X, Liu B, Chou KC.
Anal Biochem. 2015 Dec 23;497:48-56. doi: 10.1016/j.ab.2015.12.009.

pSuc-Lys – Predict Lysine Succinylation sites in Proteins with PseAAC and Ensemble Random Forest Approach

pSuc-Lys

:: DESCRIPTION

The web-server pSuc-Lys used to predict the lysine succinylation in protein.

::DEVELOPER

Xiao Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

pSuc-Lys: Predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach.
Jia J, Liu Z, Xiao X, Liu B, Chou KC.
J Theor Biol. 2016 Jan 22. pii: S0022-5193(16)00053-9. doi: 10.1016/j.jtbi.2016.01.020

ProP 1.0c – Arginine & Lysine propeptide Cleavage Sites in Eukaryotic Protein

ProP 1.0c

:: DESCRIPTION

ProP predicts arginine and lysine propeptide cleavage sites in eukaryotic protein sequences using an ensemble of neural networks. Furin-specific prediction is the default. It is also possible to perform a general proprotein convertase (PC) prediction.

::DEVELOPER

DTU Health Tech

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

ProP

:: MORE INFORMATION

Citation

Prediction of proprotein convertase cleavage sites.
Peter Duckert, Søren Brunak and Nikolaj Blom.
Protein Engineering, Design and Selection: 17: 107-112, 2004.

CPLA 1.0 – Integrated Database of Protein Lysine Acetylation

CPLA 1.0

:: DESCRIPTION

the CPLA (compendium of protein lysine acetylation) is an integrated database for lysine acetylated substrates with their sites.

::DEVELOPER

The CUCKOO Workgroup

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / WIndows / MacOsX
  • Java

:: DOWNLOAD

 CPLA

:: MORE INFORMATION

Citation

Zexian Liu, Jun Cao, Xinjiao Gao, Yanhong Zhou, Longping Wen, Xiangjiao Yang, Xuebiao Yao, Jian Ren, Yu Xue.
CPLA 1.0: an integrated database of protein lysine acetylation
Nucleic Acids Research. 2011, 39: D1029-D1034.