Tag: TreeDT

HPM / TreeDT – Association Analysis using Haplotype data or Genotype data

HPM / TreeDT

:: DESCRIPTION

HPM (Haplotype Pattern Mining) is a program for gene mapping in case-control haplotype data.

TreeDT (Tree Disequilibrium Test) extracts, essentially in the form of substrings and prefix trees, information about historical recombinations in the population.

::DEVELOPER

Group of Data mining in genetics 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux /MacOsX
  • C Compiler

:: DOWNLOAD

 HPM / TreeDT 

:: MORE INFORMATION

Citation

Hannu T. T. Toivonen et al,
Data mining applied to linkage disequilibrium mapping
Am J Hum Genet. 2000 July; 67(1): 133–145.

Sevon et al.
TreeDT: Tree pattern mining for gene mapping”
IEEE/ACM Trans Comput Biol Bioinform. 2006 Apr-Jun;3(2):174-85.