:: DESCRIPTION
GTOOL is a program for transforming sets of genotype data for use with the programs SNPTEST and IMPUTE.
::DEVELOPER
Colin Freeman , Jonathan Marchini
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
ADMIXMAP is a general-purpose program for modelling admixture, using marker genotypes and trait data on a sample of individuals from an admixed population (such as African-Americans), where the markers have been chosen to have extreme differentials in allele frequencies between two or more of the ancestral populations between which admixture has occurred. The main difference between ADMIXMAP and classical programs for estimation of admixture such as ADMIX is that ADMIXMAP is based on a multilevel model for the distribution of individual admixture in the population and the stochastic variation of ancestry on hybrid chromosomes. This makes it possible to model the associations of ancestry between linked marker loci, and the association of a trait with individual admixture or with ancestry at a linked marker locus.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Design and analysis of admixture mapping studies.
Hoggart CJ, Shriver MD, Kittles RA, Clayton DG, McKeigue PM.
Am J Hum Genet. 2004 May;74(5):965-78. Epub 2004 Apr 14.
:: DESCRIPTION
SNP tools is a general add-in for Microsoft Excel to do data conversion and basic analysis for Single Nucleotide Polymorphism (SNP) data.
::DEVELOPER
Dr. Bowang Chen
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Chen, B., et al.,
SNP_tools: A compact tool package for analysis and conversion of genotype data for MS-Excel.
BMC Res Notes, 2009. 2(1): p. 214.
:: DESCRIPTION
SNPExpress is a tool to combine visualization of gene expression, DNA copy number and genotype data.
::DEVELOPER
The Department of Hematology, Erasmus University Medical Center, Rotterdam, The Netherlands
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Genomics. 2008 Jan 25;9:41.
SNPExpress: integrated visualization of genome-wide genotypes, copy numbers and gene expression levels.
Sanders MA, Verhaak RG, Geertsma-Kleinekoort WM, Abbas S, Horsman S, van der Spek PJ, Löwenberg B, Valk PJ.
:: DESCRIPTION
HPM (Haplotype Pattern Mining) is a program for gene mapping in case-control haplotype data.
TreeDT (Tree Disequilibrium Test) extracts, essentially in the form of substrings and prefix trees, information about historical recombinations in the population.
::DEVELOPER
Group of Data mining in genetics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Hannu T. T. Toivonen et al,
Data mining applied to linkage disequilibrium mapping
Am J Hum Genet. 2000 July; 67(1): 133–145.
Sevon et al.
TreeDT: Tree pattern mining for gene mapping”
IEEE/ACM Trans Comput Biol Bioinform. 2006 Apr-Jun;3(2):174-85.
