:: DESCRIPTION
TraceGD (Trace Genetic Diseases) is essentially a program to point out the amino acid changes caused in the user given protein sequence(s) due to mutations in their corresponding DNA sequence(s) and predict the resulting genetic disease.
::DEVELOPER
Shreya Roy Chowdhury, Md. Aftabuddin
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Java TreeView is an enhanced, open source, cross-platform gene expression visualization tool. It interactivly display clustered gene expression data, similar to eisen’s TreeView.
Java TreeView renders gene expression data into several interactive views. The main treeview application considers these views interchangeable, and it is possible to define additional views.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Alok J. Saldanha,
Java Treeview—extensible visualization of microarray data
Bioinformatics (2004) 20 (17): 3246-3248.
:: DESCRIPTION
MolPrime is a chemical structure drawing tool based on the unique sketcher from the Mobile Molecular DataSheet (MMDS). Publication-quality molecular diagrams can be drawn quickly on touchscreen devices of all sizes, using the interface that has been designed from the ground up to make optimal use of gestures and template-guided placement.
::DEVELOPER
Molecular Materials Informatics Inc.
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
BioFabric is a network visualization tool that uses a novel presentation method where nodes are represented using horizontal line segments.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Longabaugh, W.J.R.
Combing the hairball with BioFabric: a new approach for visualization of large networks.
BMC Bioinformatics, 13:275, 2012.
:: DESCRIPTION
Typhon is an algorithm for building an index from a multiple alignment for use in seeding local alignments to a query sequence.
::DEVELOPER
Jason Flannick , Serafim Batzoglou
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2005 Aug 12;33(14):4563-77. Print 2005.
Using multiple alignments to improve seeded local alignment algorithms.
Flannick J, Batzoglou S.
:: DESCRIPTION
BioFace is a simple software for editing and analyzing DNA, RNA, and protein sequences that is written in Java using SWT and JFace as libraries. Opening GenBank, FASTA, EMBL, or simple sequence files and analizing these sequences can be done.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
mmass is a software by a mass spectrometrist that is an excellent mass spectrum viewer with other features related to proteomics;
::DEVELOPER
Martin Strohalm, PhD.
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
mMass as a Software Tool for the Annotation of Cyclic Peptide Tandem Mass Spectra
Niedermeyer THJ and Strohalm M
PLoS ONE 7 (9), e44913 (2012)
:: DESCRIPTION
Cyflogic is a flow cytometry data analysis tool for Microsoft Windows enviroment. It has all “regular” analysis capabilities, such as dot plot, histogram and statistics. In addition, Cyflogic offers new innovative tools for your data analysis.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
WCD (wcdest – Tool for clustering Expressed Sequence Tags (ESTs) ) is a DNA sequence clustering tool. It reads in a set of DNA sequences (typically ESTs or mRNAs) in FASTA format and organises them into clusters of similar sequences, producing a list of clusters and their members on standard output.
::DEVELOPER
Scott Hazelhurst and his team at the University of the Witwatersrand
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
An overview of the wcd EST clustering tool.
Hazelhurst S, Hide W, Lipták Z, Nogueira R, Starfield R.
Bioinformatics. 2008 Jul 1;24(13):1542-6.
:: DESCRIPTION
BioGranat is a molecular biology graph visualisation and analysis tool. It is based on the Java OSGi bundle architecture and currently provides a graphical user interface, input and output routines for various graph file formats, a facility to use the JUNG library, 2D graph layout routines, 3D visualisation of graphs, JAVA scripting and graph analysis algorithms.
:: DEVELOPER
Hochschule Hannover and King’s College London
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Dand N, Sprengel F, Ahlers V, Schlitt T
BioGranat-IG: A network analysis tool to suggest mechanisms of genetic heterogeneity from exome sequencing data
Bioinformatics. 2013,29(6):733-741.
