TargetMine v1.8.5.0 – Data Warehouse for Candidate Gene Prioritisation and Target Discovery

TargetMine v1.8.5.0

:: DESCRIPTION

TargetMine is an integrated data warehouse for retrieval of targetgenes and proteins for experimental characterisation and drug discovery.It utilises a customised InterMine framework, which enables complicated searches that are difficult to perform with existing tools and it also offers integration of custom annotations and in-house experimental data. TargetMine also facilitates analysis of query gene/protein sets for enriched biological themes and associations, which can be employed for candidate gene prioritisation.

::DEVELOPER

the Mizuguchi Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Server

:: DOWNLOAD

TargetMine

:: MORE INFORMATION

Citation

Chen Y-A, Tripathi LP, Mizuguchi K (2011)
TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery.
PLoS ONE 6(3): e17844. doi:10.1371/journal.pone.0017844

FamAnn 1.0 – Automated Variant Annotation pipeline to facilitate Target Discovery for Family-based Sequencing Studies

FamAnn 1.0

:: DESCRIPTION

FamAnn is an automated variant annotation pipeline designed for facilitating target discovery for family-based sequencing studies.

::DEVELOPER

McCombie lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /Windows/ MacOsX
  • Perl

:: DOWNLOAD

 FamAnn

:: MORE INFORMATION

Citation

FamAnn: an automated variant annotation pipeline to facilitate target discovery for family-based sequencing studies.
Yao J, Zhang KX, Kramer M, Pellegrini M, McCombie WR.
Bioinformatics. 2014 Jan 13.