TargetMine v1.8.5.0 – Data Warehouse for Candidate Gene Prioritisation and Target Discovery

TargetMine v1.8.5.0

:: DESCRIPTION

TargetMine is an integrated data warehouse for retrieval of targetgenes and proteins for experimental characterisation and drug discovery.It utilises a customised InterMine framework, which enables complicated searches that are difficult to perform with existing tools and it also offers integration of custom annotations and in-house experimental data. TargetMine also facilitates analysis of query gene/protein sets for enriched biological themes and associations, which can be employed for candidate gene prioritisation.

::DEVELOPER

the Mizuguchi Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Server

:: DOWNLOAD

TargetMine

:: MORE INFORMATION

Citation

Chen Y-A, Tripathi LP, Mizuguchi K (2011)
TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery.
PLoS ONE 6(3): e17844. doi:10.1371/journal.pone.0017844

BioDWH 0.2 – Bioinformatics Data Warehouse

BioDWH 0.2

:: DESCRIPTION

BioDWH is a novel bioinformatics data warehouse software kit that integrates biological information from multiple public life science data sources into a local database management system. It stands out from other approaches by providing up-to-date integrated knowledge, platform and database independence as well as high usability and customization.

::DEVELOPER

the Bioinformatics / Medical Informatics department at Bielefeld University.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows/ MacOsX
Java
Oracle or MySQL

:: DOWNLOAD

BioDWH

:: MORE INFORMATION

Citation

BioDWH: a data warehouse kit for life science data integration.
Töpel T, Kormeier B, Klassen A, Hofestädt R.
J Integr Bioinform. 2008 Aug 25;5(2). doi: 10.2390/biecoll-jib-2008-93.

BATEx 0.1.2 – A Data Warehouse for Array-based Gene Expression Data of Plants

BATEx 0.1.2

:: DESCRIPTION

The aim of BATEx is the establishment of a data warehouse for array-based gene expression data of plants to enable experiment-spanning expression data analyses. Therefore, data is integrated from various data sources, such as BarleyBase, AtGenExpress, AFGC, TIGR SGED and IPK’s operational system FLAREX.

::DEVELOPER

the Plant Genome Resources Center (PGRC)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

BATEx

:: MORE INFORMATION