TAPIR 1.2 – Visualization of Targeted Proteomics data

TAPIR 1.2

:: DESCRIPTION

TAPIR is a visualization software for chromatographic data obtained by mass spectrometry. It provides efficient visualization of high-throughput targeted proteomics experiments.

::DEVELOPER

Röst Lab

:: SCREENSHOTS

TAPIR

:: REQUIREMENTS

  • Windows / MacOsX
  • Python

:: DOWNLOAD

 TAPIR

:: MORE INFORMATION

Citation

Efficient visualization of high-throughput targeted proteomics experiments: TAPIR.
Röst H, Rosenberger G, Aebersold R, Malmström L.
Bioinformatics. 2015 Mar 18. pii: btv152.

TAPIR 1.2 – Prediction of Plant microRNA Targets

TAPIR 1.2

:: DESCRIPTION

TAPIR is a web server designed for the prediction of plant microRNA targets. The server offers the possibility to search for plant miRNA targets using a fast and a precise algorithm. The precise option is much slower but guarantees to find less perfectly paired miRNA – target duplexes. Furthermore, the precise option allows the prediction of target mimics, which are characterized by a miRNA – target duplex having a large loop, making them undetectable by traditional tools.

::DEVELOPER

Van de Peer Lab

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux
  • Perl
  • Bioperl
  • ViennaRNA library + perl modules

:: DOWNLOAD

 TAPIR

:: MORE INFORMATION

Citation

Bonnet, E., He, Y., Billiau, K., Van de Peer, Y. (2010)
TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.
Bioinformatics 26, 1566-1568.