Tag: Super

Super 0.3 – Screen Superposable Oligopeptide Fragments from PDB

Super 0.3

:: DESCRIPTION

Super is a web server to rapidly screen superposable oligopeptide fragments from the Protein Data Bank

::DEVELOPER

Laboratory of Computational Biology (LCB), Monash University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C Compiler

:: DOWNLOAD

  Super

:: MORE INFORMATION

Citation:

James H. Collier, Arthur M. Lesk, Maria Garcia de la Banda and Arun S. Konagurthu,
Super: A web server to rapidly screen superposable oligopeptide fragments from the Protein Data Bank.
Nucleic Acids Research 40(W1): W334-W339, July 2012.

transFold – Super-secondary Structure Prediction of Transmembrane β-barrel proteins

transFold

:: DESCRIPTION

transFold is a web server for beta-barrel supersecondary structure prediction. Unlike other software which employ machine learning methods, transFold uses multi-tape S-attribute grammars to describe the space of all possible supersecondary structures, then applies dynamic programming to compute the global energy minimum structure.

::DEVELOPER

Clote Lab 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

J. Waldispühl, B. Berger, P. Clote, J.-M. Steyaert,
TransFold: a Web Server for predicting the structure and residue contacts of transmembrane beta-barrels,
Nucleic Acids Res. 34(Web Server Issue):189-193 (2006).