:: DESCRIPTION
SFA-SPA is a suffix array based short peptide assembler for metagenomic data
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
SFA-SPA: a suffix array based short peptide assembler for metagenomic data.
Yang Y, Zhong C, Yooseph S.
Bioinformatics. 2015 Jan 30. pii: btv052.
:: DESCRIPTION
PoSSuM / PoSSuMsearch is a software which significant speedup of database searches with HMMs by search space reduction with PSSM (position specific scoring matrices) family model.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Michael Beckstette, Robert Homann, Robert Giegerich, and Stefan Kurtz
Significant speedup of database searches with HMMs by search space reduction with PSSM family models
Bioinformatics, 15 December 2009; 25: 3251 – 3258.
:: DESCRIPTION
ABMapper is a portable, easy-to-use package for spliced alignment, junction site detection, and reads mapping.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2011 Feb 1;27(3):421-2. doi: 10.1093/bioinformatics/btq656. Epub 2010 Dec 17.
ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping.
Lou SK, Ni B, Lo LY, Tsui SK, Chan TF, Leung KS.
