GRASP 0.0.4 – Guided Reference-based Assembly of Short Peptides

GRASP 0.0.4

:: DESCRIPTION

GRASP is a gene annotation tool for metagenomic studies. GRASP assembles the fragmented short-peptides, which are called from the NGS reads, and aligns the assembled contigs to the query reference protein. GRASP achieves much higher sensitivity than BLASTP for gene annotation purpose.

::DEVELOPER

GRASP team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 GRASP

:: MORE INFORMATION

Citation

GRASP: Guided Reference-based Assembly of Short Peptides.
Zhong C, Yang Y, Yooseph S.
Nucleic Acids Res. 2014 Nov 20. pii: gku1210

SFA-SPA 0.2.1 – A Suffix Array based Short Peptide Assembler for Metagenomic Data

SFA-SPA 0.2.1

:: DESCRIPTION

SFA-SPA is a suffix array based short peptide assembler for metagenomic data

::DEVELOPER

SFA-SPA team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler

:: DOWNLOAD

 SFA-SPA

:: MORE INFORMATION

Citation

SFA-SPA: a suffix array based short peptide assembler for metagenomic data.
Yang Y, Zhong C, Yooseph S.
Bioinformatics. 2015 Jan 30. pii: btv052.