Tag: structural similarity

GMASS – Genome Assembly Structural Similarity

GMASS

:: DESCRIPTION

The GMASS score is a novel measure for representing structural similarity between two assemblies. It represents the structural similarity of a pair of assemblies based on the length and number of similar genomic regions defined as consensus segment blocks (CSBs) in the assemblies.

::DEVELOPER

Bioinformatics Laboratory, Konkuk University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

GMASS

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2019 Mar 18;20(1):147. doi: 10.1186/s12859-019-2710-z.
GMASS: a novel measure for genome assembly structural similarity.
Kwon D, Lee J, Kim J.

LSim 1.0.0 – Superposes Macromolecular Electron Densities and Computes Structural Similarity Score

LSim 1.0.0

:: DESCRIPTION

LSim superposes macromolecular electron densities and computes a structural similarity score. LSim computations scale linearly with the size of the molecules being compared.

::DEVELOPER

Pere Constans

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 LSim

:: MORE INFORMATION

Citation

Constans, P.
Linear Scaling Approaches to Quantum Macromolecular Similarity: Evaluating the Similarity Function.
J. Comput. Chem. 23, 1305-1313, 2002

MassiveSAR – Small molecule structural similarity analysis and clustering

MassiveSAR

:: DESCRIPTION

MassiveSAR is a software for analysis of high-throughput screening data and generally for analysis of data sets containing multiple chemical compounds. This software is most suitable for finding related chemical structures and for establishing structure-activity relationships (SAR) within experimentally generated molecule sets or libraries of small molecules.

::DEVELOPER

BiochemLabSolutions.com

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 MassiveSAR

:: MORE INFORMATION